View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1350R-Insertion-15 (Length: 840)
Name: NF1350R-Insertion-15
Description: NF1350R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350R-Insertion-15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 9 - 703
Target Start/End: Complemental strand, 3436067 - 3435390
Alignment:
| Q |
9 |
atatttttagaacgaaaggcaccatcctcattattatcttgcaaattaaattcttgttcccggaacttgtcctcctccatccattcctccgtcatctcat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3436067 |
atatttttagaacgaaaggcaccatcctcattattatcttgcaaattaaattcttgttcccggaacttgtcctcctccatccattcctccgtcatctcat |
3435968 |
T |
|
| Q |
109 |
tcaccatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatcacaaatcgaagcatcctcaaacaaacaagcatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3435967 |
tcaccatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatcacaaatcgaagcatcctcaaacaaacaagcatc |
3435868 |
T |
|
| Q |
209 |
ctcgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaatcagcttcgtcattaataacctctagggatgaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3435867 |
ctcgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaatcagcttcgtcattaataatctctagggatgaa |
3435768 |
T |
|
| Q |
309 |
gttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaatcgaccaaaatcaaaagcacataatctnnnnn |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3435767 |
gttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcaattatctaccctcaacaatcgaccaaaatcaaaagcacataatctaaaaa |
3435668 |
T |
|
| Q |
409 |
nnnttccattccatgcttgcaaagaaactccataaattcgaatccgtgcacctccttcaaatttttaaaatatatattccaattaaaagatactattcca |
508 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||| | | || || ||||||| |
|
|
| T |
3435667 |
atttcccattccatgcttgcaaagaaactccgtaaattcgaatccgtgaacctctttcaaat--ttaacaca-atctt---------------tattcca |
3435586 |
T |
|
| Q |
509 |
cgcaatagtatctcttatactctctttaatccaatttttattatcccaaaaataactaatgttgagatttcatttaaaatatatattacgaaatcgtt-t |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
3435585 |
tgcaatagtatctcttatactctctttaatccaatttttattatcccaaaaataactaatgttgagattccatttaaaatatatattacgaaatcgttgt |
3435486 |
T |
|
| Q |
608 |
tgtaaaaagattcgttttggaaatgaagttggctcctttannnnnnnaatgttattaaaaaactaagtaaactttcatttcttagaacacacaaat |
703 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3435485 |
tgtaaaaagattcgttttggaaatgaagttggctcctttatttttttaatgttattaaaaaactaagtaaactttcatctcttagaacacacaaat |
3435390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 791 - 840
Target Start/End: Complemental strand, 3435304 - 3435255
Alignment:
| Q |
791 |
gttcgttaattttctatccccgtgaccaattacaagcattcaccataccc |
840 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3435304 |
gttcgttaattttctatccccgtgaccaattataagcattcaccataccc |
3435255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 8e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 77 - 403
Target Start/End: Original strand, 17964044 - 17964370
Alignment:
| Q |
77 |
gtcctcctccatccattcctccgtcatctcattcaccatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatca |
176 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||| || || |||| | || |||| |||| | ||| || |
|
|
| T |
17964044 |
gtcctcctccatccattcctccgacatctcattcaccaaattatctacgtcattattcacaactaagtcaccatgatcctctgcttcttcattatcacca |
17964143 |
T |
|
| Q |
177 |
caaatcgaagcatcctcaaacaaacaagcatcctcgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaat |
276 |
Q |
| |
|
||| || | |||||||||| ||||||||||||||||| || | || ||| | ||||| | ||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
17964144 |
caacccggatcatcctcaaataaacaagcatcctcgccgaacggaaaacccaaatcctctacaattttaatattcatcaaagcatcatcaaccaacaaat |
17964243 |
T |
|
| Q |
277 |
cagcttcgtcattaataacctctagggatgaagttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaa |
376 |
Q |
| |
|
| || ||| | || |||||||| | ||| |||| || ||||||||||||| | |||||| ||| ||||||| ||||||||| |||| |||| |||| |
|
|
| T |
17964244 |
ctgcgtcggcttttataacctccaaggaagaagctggcaataaaatacgagcgtaatcatacctttctctataaaccgtgcaactatccacccgtaacat |
17964343 |
T |
|
| Q |
377 |
tcgaccaaaatcaaaagcacataatct |
403 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
17964344 |
tcgactaaaatcaaaagcacataatct |
17964370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University