View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1350R-Insertion-16 (Length: 898)
Name: NF1350R-Insertion-16
Description: NF1350R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350R-Insertion-16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 833; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 833; E-Value: 0
Query Start/End: Original strand, 9 - 893
Target Start/End: Complemental strand, 33860596 - 33859713
Alignment:
| Q |
9 |
tggacgatgtgctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctctatgaatttgtattgttccgatccttccctccag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
33860596 |
tggacgatgtgctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctcgatgaatttgtattgttccgatccttctctccaa |
33860497 |
T |
|
| Q |
109 |
tcatgctcactgtcagctatacagaaacgaaacatgccataatctgttgcatacctgcatatttccaattttcatcattcatttggaccgagtgataata |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33860496 |
tcatgctcactgtcagctatacagaaacgaaacatgccataatctgttgcatacctgcatatttccaattttcatcattcatttggaccaagtgataata |
33860397 |
T |
|
| Q |
209 |
aattcaattgagagatgaaaatcttatatactaaagactaaagctaaacatgttatagtatgtatttttgtttataaccatgttataggtacggagtatc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33860396 |
aattcaattgagagatgaaaatcttatatactaaagactaaagctaaacatgttatagtatgtatttttgtttataaccatgttataggtacggagtatc |
33860297 |
T |
|
| Q |
309 |
caccattgtttaagaatgcttgtctgtgtcctaaaatttgtttcgcgcacaatatgagtcctcccctcacaactagattttctaaatataaaagatctag |
408 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33860296 |
caccattgtttaagaatgcttgtctccgtcctaaaatttgtttcgcgcacaatatgagtcctcccctcacaactagattttctaaatataaaagatctag |
33860197 |
T |
|
| Q |
409 |
gaattgaaccagtggtcacttgattaaggaatttgagtaccttagcactcggaccaaccatatgttggtggttcatggtttgtatttagattaatataac |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33860196 |
gaattgaaccagtggtcacttgattaaggaatttgagtaccttagcactcgg-ctaaccatatgttggtggttcatggtttgtatttagattaatataac |
33860098 |
T |
|
| Q |
509 |
ttaccagaatttggctttgttctcagcagggcaatagtacatggtttccgcaggaactccacattctccacctgaatctggagtgtcatagaaggatcct |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33860097 |
ttaccagaatttggctttgttctcagcagggtaatagtacatggtttctgcaggaactccacattctccacctgaatctggagtgtcatagaaggatcct |
33859998 |
T |
|
| Q |
609 |
gagtttggccaatcacgttcgtgatttccactgcagtatgaaaaaatgtagcatcctttcagtctaaaacaatatgtaaaactcaattcaaatgtctatg |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33859997 |
gagtttggccaatcacgttcgtgatttccactgcagtatgaaaaaatgtagcatcctttcagtctaaaacaatatgtaaaactcaattcaaatgtctatg |
33859898 |
T |
|
| Q |
709 |
gattaaaatgatgtcaagcaaactgaaccttgctatcatatatggaacttttgatgaaatttgttgcacttgagctgtgaattggtcccactgtgagatg |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33859897 |
gattaaaatgatgtcaagcaaactgaaccttgctatcatatatggaacttttgatgaaatttgttgcacttgagctgtgaattggtcccactgtgagatg |
33859798 |
T |
|
| Q |
809 |
tatccatttgcataaggcatatctcctatgtggaaatcaatgtcaaagttgtctagatcattgatgagctggtcagtcttgttaa |
893 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33859797 |
tatccatttgcataaggcatatctcctatgtggaaaacaatgtcaaagttgtctagatcattgatgagctggtcagtcgtgttaa |
33859713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 481 - 882
Target Start/End: Complemental strand, 33870476 - 33870076
Alignment:
| Q |
481 |
tcatggtttgtatttagattaatataacttaccagaatttggctttgttctcagcagggcaatagtacatggtttccgcaggaactccacattctccacc |
580 |
Q |
| |
|
|||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
33870476 |
tcatagtttgcatttagattaatataactcaccagaatttggctttgttctcagcagggtaatagtacatggtttctgcaggtactccacattctccacc |
33870377 |
T |
|
| Q |
581 |
tgaatctggagtgtcatagaaggatcctgagtttggccaatcacgttcgtgatttccactgcagtatgaaaaaatgtagcatcctttcagtctaaaacaa |
680 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| ||||||||||| ||||| || |
|
|
| T |
33870376 |
agaatctggagtgtcatagaaggatcctgagtttggccaagagcgttcgtgatttccaccgcagtatgaataaatgtgatatcctttcagtttaaaagaa |
33870277 |
T |
|
| Q |
681 |
tatgtaaaactcaattcaaatgtctatggattaaaatgatgtcaagcaaactgaaccttgctatcatatatggaacttttgatgaaatttgttgcacttg |
780 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||| ||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
33870276 |
tatgtaaaactcaattcaaatttctatggcctaaaatgattgcaagcaagc-gaaccttgctatcatatatggaactgttgatgaaatttgttgaacttg |
33870178 |
T |
|
| Q |
781 |
agctgtgaattggtcccactgtgagatgtatccatttgcataaggcatatctcctatgtggaaatcaatgtcaaagttgtctagatcattgatgagctgg |
880 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||| |
|
|
| T |
33870177 |
agctgtgaattgatcccactgtgagatgtatcgatttgcataaggcatatctcctatgtggaaaacaatgtcaaagttgtctaaatccttgatgagctgg |
33870078 |
T |
|
| Q |
881 |
tc |
882 |
Q |
| |
|
|| |
|
|
| T |
33870077 |
tc |
33870076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 33875470 - 33875288
Alignment:
| Q |
13 |
cgatgtgctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctctatgaatttgtattgttccgatccttccctccagtcat |
112 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
33875470 |
cgatgtgctgcaaatattaaccatggttgttgttttctatctacagttgcaaggtaatgctcgatgaatttgtactgttccgatccttctctccagtcat |
33875371 |
T |
|
| Q |
113 |
gctcactgtcagctatacagaaacgaaacatgccataatctgttgcatacctgcatatttccaattttcatcattcatttgga |
195 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33875370 |
gctcactgtctgctatacagaaatgaaacatgccataatctgttgcatacctgcatatttccaattttcatcattcatttgga |
33875288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 33870879 - 33870701
Alignment:
| Q |
13 |
cgatgtgctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctctatgaatttgtattgttccgatccttccctccagtcat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33870879 |
cgatgtgctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctcgatgaatttgtattgttccgatccttctctccagtcat |
33870780 |
T |
|
| Q |
113 |
gctcactgtcagctatacagaaacgaaacatgccataatctgttgcatacctgcatatttccaattttcatcattcatt |
191 |
Q |
| |
|
| ||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |
|
|
| T |
33870779 |
gttcagtgtctgctatacagaaacgaaacatgccataatctgtggcatacctgcatatttccaattttcgtcgttcatt |
33870701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 673 - 882
Target Start/End: Complemental strand, 33875050 - 33874842
Alignment:
| Q |
673 |
taaaacaatatgtaaaactcaattcaaatgtctatggattaaaatgatgtcaagcaaactgaaccttgctatcatatatggaacttttgatgaaatttgt |
772 |
Q |
| |
|
||||| ||| |||||| ||||||| |||||| |||| ||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33875050 |
taaaagaatttgtaaagctcaattaaaatgtgaatggcataaaatgattgcaagctaaca-aaccttgctatcatatatggaacagttgatgaaatttgt |
33874952 |
T |
|
| Q |
773 |
tgcacttgagctgtgaattggtcccactgtgagatgtatccatttgcataaggcatatctcctatgtggaaatcaatgtcaaagttgtctagatcattga |
872 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||| ||||||| || |||| | ||| |||| |
|
|
| T |
33874951 |
tgcacctgagctgtgaattgatcccactgtgagatgtatccatttgcatatggaagatctcctatgtggaaaacaatgtcgaaactgtccaaatccttga |
33874852 |
T |
|
| Q |
873 |
tgagctggtc |
882 |
Q |
| |
|
|||| ||||| |
|
|
| T |
33874851 |
tgagttggtc |
33874842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 492 - 547
Target Start/End: Complemental strand, 33875135 - 33875080
Alignment:
| Q |
492 |
atttagattaatataacttaccagaatttggctttgttctcagcagggcaatagta |
547 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
33875135 |
atttagattaataaatattaccagaatttggctttattctcagcagggtaatagta |
33875080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 42784409 - 42784256
Alignment:
| Q |
12 |
acgatgtgctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctctatgaatttgtattgttccgatccttccctccagtca |
111 |
Q |
| |
|
|||||| || |||||||| ||||| ||||||| || ||| || ||||||||||| |||||||| ||||||||||| ||||| |||||||| | ||| ||| |
|
|
| T |
42784409 |
acgatgcgcagcaaagatcaaccagggttgtttttgtctgtccactgttgcaagacaatgctcgatgaatttgtactgttcagatccttctcgccaatca |
42784310 |
T |
|
| Q |
112 |
tgctcactgtcagctatacagaaacgaaacatgccataatctgttgcatacctg |
165 |
Q |
| |
|
|| ||| |||||||||| ||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
42784309 |
tgttcagtgtcagctatgcagaagcgaaacatgccataatccgttgcatacctg |
42784256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 734 - 844
Target Start/End: Complemental strand, 42783950 - 42783840
Alignment:
| Q |
734 |
aaccttgctatcatatatggaacttttgatgaaatttgttgcacttgagctgtgaattggtcccactgtgagatgtatccatttgcataaggcatatctc |
833 |
Q |
| |
|
||||| || ||||||||||| ||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
42783950 |
aacctggcaatcatatatggtactgttgatgcaattggttccacttgagctgtgaattggtcccactgtgagatgtatccgtttgcatatgttatatctc |
42783851 |
T |
|
| Q |
834 |
ctatgtggaaa |
844 |
Q |
| |
|
||||||||||| |
|
|
| T |
42783850 |
ctatgtggaaa |
42783840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 563 - 649
Target Start/End: Complemental strand, 42784117 - 42784031
Alignment:
| Q |
563 |
aactccacattctccacctgaatctggagtgtcatagaaggatcctgagtttggccaatcacgttcgtgatttccactgcagtatga |
649 |
Q |
| |
|
||||||||| || || |||||||||| | |||||| |||||||||||||| |||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
42784117 |
aactccacactcgccgcctgaatctgtaacgtcataaaaggatcctgagttgggccaatcacgttcatgattaccactgcaggatga |
42784031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 20003611 - 20003693
Alignment:
| Q |
67 |
caatgctctatgaatttgtattgttccgatccttccctccagtcatgctcactgtcagctatacagaaacgaaacatgccata |
149 |
Q |
| |
|
|||||||| ||||| ||||||||||| | |||||| ||||| ||||| ||| |||| || | ||||||||| ||||||||||| |
|
|
| T |
20003611 |
caatgctcaatgaacttgtattgttctgttccttctctccaatcatgttcagtgtctgcgacacagaaacggaacatgccata |
20003693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University