View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350R-Insertion-18 (Length: 958)
Name: NF1350R-Insertion-18
Description: NF1350R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350R-Insertion-18 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 491
Target Start/End: Complemental strand, 49245221 - 49244738
Alignment:
| Q |
8 |
acctttaaatcccaaagaaaaacaaaccaattattcatcaattgaacctacaaactcataatctctctcttaatcttctcaataacagcaccattttgaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49245221 |
acctttaaatcccaaagaaaaacaaaccaattattcatcaattgaacctacaaactcataatctctctcttaatcttctcaataacagcaccattttgaa |
49245122 |
T |
|
| Q |
108 |
ccaaagcagtgattgccaagatcaaattcccatcattaacagaaacattagcagctaaaacctcagcttcattcttcaagaacaccttcaaaataacagt |
207 |
Q |
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| T |
49245121 |
ccaaagcagtgattgccaagatcaaattcccatcattaacagaaacattagcagctaaaacctcagcttcattcttcaagaacaccttcaaaataacagt |
49245022 |
T |
|
| Q |
208 |
aatcaaaccaggtttagccacagattcaatcccaaagaaagccacattgcttgaaccagtaaccgtaacagagcaattgggattcctattacgacaggga |
307 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49245021 |
aatcaacccaggtttagccacagattcaatcccaaagaaagccacattgcttgaaccagtaaccgtaacagagcaattgggattcctattacgacaggga |
49244922 |
T |
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| Q |
308 |
accaacaaattaaaaaccccttcaacatgtttctttgattttgattccttcatctcctccaacattttcttcttttcctcaagttccttaatgtactgga |
407 |
Q |
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| T |
49244921 |
accaacaaattaaaacccctttcaacatgtttctttgattttgattccttcatctcctccaaaattttcttcttttcctcaagttccttaatgtactgga |
49244822 |
T |
|
| Q |
408 |
ttgtttcgttcacaatcacttcctgtgtagcctnnnnnnnnnnnnncccatttcagataacaaatcaagctataatgggtcgat |
491 |
Q |
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| T |
49244821 |
ttgtttcgttcacaatcacttcctgtgtagcctaaaaaaacaaaaacccatttcagataacaaatcaaactataatgggtcgat |
49244738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 554 - 920
Target Start/End: Complemental strand, 49244667 - 49244308
Alignment:
| Q |
554 |
ttaacattggggtggagagtagggacagtggtagtgaggtgagtgaacatttgcttcaatttgttccttctttcacgttcaacatttagaacctcttcgg |
653 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49244667 |
ttaacattggggtggagagtagggacagtggtagtgaggtgagtgaacatttgcttcaatttgttccttctttcacgttcaacatttagaacctcttcgg |
49244568 |
T |
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| Q |
654 |
ttttaatagtagtggcacgttttctgttactcatttcagaaagtgatttgttactgtactcttccatacgatacgagtctcacttttagttggtttatat |
753 |
Q |
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| T |
49244567 |
ttttaatagtagtggcacgttttctgttactcatttcagaaagtgatttgttactgtactcttccat-----acgagtctcactcttagttggtttatat |
49244473 |
T |
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| Q |
754 |
atgaaagaaagagagagaaaattgttagtgaggtttggggttnnnnnnnntgaaaaccaattttgtgtaacnnnnnnnnctagttatttccatcattgtt |
853 |
Q |
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| T |
49244472 |
atgaaagaaagagagagaaaattgttagtgaggtttggggtt-aaaaaaatgaaaaccaattttgtgtaac-tttttttctagttatttccatcattgtt |
49244375 |
T |
|
| Q |
854 |
taatttgttttcaattaatgttgatttcagatgttgggatatatttaaggagttgaatggaaaagtg |
920 |
Q |
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| T |
49244374 |
taatttgttttcaattaatgttgatttcagatgttgggatatatttaaggggttgaatggaaaagtg |
49244308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 49059504 - 49059376
Alignment:
| Q |
99 |
cattttgaaccaaagcagtgattgccaagatcaaattcccatcattaacagaaacattagcagctaaaacctcagcttcattcttcaagaacaccttcaa |
198 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| || |||||| |||||||| ||| | || || | |||||| |
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| T |
49059504 |
cattttgaaccaatgcagtgattgccaagatcaaatttccatcattaacagagacatttgccactaaaatctcagcttgattgtccacaaatatcttcaa |
49059405 |
T |
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| Q |
199 |
aataacagtaatcaaaccaggtttagcca |
227 |
Q |
| |
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||| ||||| |||||||||| |||||| |
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| T |
49059404 |
aatcgcagtagccaaaccaggtctagcca |
49059376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 348 - 404
Target Start/End: Original strand, 49059099 - 49059152
Alignment:
| Q |
348 |
ttgattccttcatctcctccaacattttcttcttttcctcaagttccttaatgtact |
404 |
Q |
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||||||||||||||||||| |||| |||||||||||||||| ||||| ||||||| |
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| T |
49059099 |
ttgattccttcatctcctctaaca---tcttcttttcctcaagctccttgatgtact |
49059152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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