View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1350R-Insertion-19 (Length: 980)

Name: NF1350R-Insertion-19
Description: NF1350R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1350R-Insertion-19
NF1350R-Insertion-19
[»] chr4 (4 HSPs)
chr4 (682-912)||(2516808-2517040)
chr4 (41-103)||(2489480-2489542)
chr4 (8-65)||(5034655-5034712)
chr4 (13-104)||(2626953-2627044)
[»] chr5 (1 HSPs)
chr5 (528-680)||(28800888-28801040)
[»] chr2 (1 HSPs)
chr2 (572-703)||(21019035-21019166)
[»] scaffold0596 (1 HSPs)
scaffold0596 (516-589)||(2926-2999)
[»] chr6 (1 HSPs)
chr6 (527-624)||(7859323-7859420)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 6e-83; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 682 - 912
Target Start/End: Original strand, 2516808 - 2517040
Alignment:
Q  682 ttgaagcattccaaatcaaccgaaaaccattcttagtcttcttattcctcgcctaatttgtccaacatagaaagggaaccaatagattatgtggtgttgt 781  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2516808 ttgaagcattccaaatcaaccgaaaaccatttttagtcttcttattcctcgcctcatttgtccaacatagaaagggaaccaatagattatgtggtgttgt 2516907  T
Q  782 taattttaattgaagccacctcattatcttttgacacaccttcgccaccacttcacaatgcnnnnnnnggtgtag-agcgtttcctccatcctcccacaa 880  Q
    || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||||| |  |||||||||||||||||||||    
T  2516908 tacttttaattgaagccacctcattatcttttgccacaccttcgccaccacttcacaatgcaaaaaaaggtgtagaattgtttcctccatcctcccacaa 2517007  T
Q  881 aa-acacacactcttcgatgcat-cgcgttcaaa 912  Q
    || ||||| |||||||||||||| ||||||||||    
T  2517008 aacacaca-actcttcgatgcatccgcgttcaaa 2517040  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 2489480 - 2489542
Alignment:
Q  41 attctaagcacataaaggcagattgtgagtaagaaaccaaactctaattgacacaaggttgat 103  Q
    |||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||    
T  2489480 attcgaagcacataaaggcagattgtgagtaagaaaccaaagtataattgaaacaaggttgat 2489542  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 5034655 - 5034712
Alignment:
Q  8 aaaacaggtaaaagactttgaataattattgacattctaagcacataaaggcagattg 65  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  5034655 aaaactggtaaaagactttgaataattattaacattctaagcacataaaggaagattg 5034712  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 2627044 - 2626953
Alignment:
Q  13 aggtaaaagactttgaataattattgacattctaagcacataaaggcagattgtgagtaagaaaccaaactctaattgacacaaggttgata 104  Q
    ||||||||||||||   |||||||||||||||||| |||||||||||||| |  ||||||||| |  || |||||| |||| ||||||||||    
T  2627044 aggtaaaagactttaggtaattattgacattctaaacacataaaggcagaatccgagtaagaagctcaagtctaatagacataaggttgata 2626953  T

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Target: chr5 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 528 - 680
Target Start/End: Complemental strand, 28801040 - 28800888
Alignment:
Q  528 ttccaacaccacttgtaataccaacacgatgctattttcaatcaactcatactccaataccacgaaagaactttaatattctccaccaaatcatctaccc 627  Q
    ||||||||||| |  |||||| |||| ||||||||||| | |   ||||||||||||||||| |  ||||| || ||||||||||||||||| ||||||     
T  28801040 ttccaacaccaatcataatacgaacatgatgctattttaagtttgctcatactccaataccaagctagaaccttgatattctccaccaaatcctctacct 28800941  T
Q  628 cggccacaccattattaaatacaatgtcattccttcgcttccatatagcccaa 680  Q
    |  |||||||||||| ||| | ||  ||||||| || |||||| ||| |||||    
T  28800940 caaccacaccattataaaagataacctcattccgtctcttccaaataacccaa 28800888  T

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Target: chr2 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 572 - 703
Target Start/End: Complemental strand, 21019166 - 21019035
Alignment:
Q  572 actcatactccaataccacgaaagaactttaatattctccaccaaatcatctaccccggccacaccattattaaatacaatgtcattccttcgcttcc-a 670  Q
    ||||| |||||||||||| || |||||||||||||| ||||||||||||||||   || | |||||| |||| || ||||| |||||||||| ||||| |    
T  21019166 actcaaactccaataccatgatagaactttaatattttccaccaaatcatctaagtcgacaacacca-tattgaacacaatatcattccttctcttccaa 21019068  T
Q  671 tatagcccaagttgaagcattccaaatcaaccg 703  Q
     |||||||||   |  |||||||||||||||||    
T  21019067 aatagcccaaaccgtcgcattccaaatcaaccg 21019035  T

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Target: scaffold0596 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 516 - 589
Target Start/End: Original strand, 2926 - 2999
Alignment:
Q  516 cattcccgtggattccaacaccacttgtaataccaacacgatgctattttcaatcaactcatactccaatacca 589  Q
    |||||| |||| ||||||||| |||||||| || |||||||||| |||||||| | ||||||||||||| ||||    
T  2926 cattcctgtgggttccaacactacttgtaaaacaaacacgatgcaattttcaaccgactcatactccaaaacca 2999  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 624
Target Start/End: Complemental strand, 7859420 - 7859323
Alignment:
Q  527 attccaacaccacttgtaataccaacacgatgctattttcaatcaactcatactccaataccacgaaagaactttaatattctccaccaaatcatcta 624  Q
    |||| |||||||||  |||||| ||||||  |||||| |||    |||||||||||||||||| | |||||| || ||||||||||||||||| ||||    
T  7859420 attcgaacaccactcataatacaaacacgtcgctattatcagcttactcatactccaataccaagcaagaaccttgatattctccaccaaatcctcta 7859323  T

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