View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1350R-Insertion-2 (Length: 110)

Name: NF1350R-Insertion-2
Description: NF1350R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1350R-Insertion-2
NF1350R-Insertion-2
[»] chr5 (2 HSPs)
chr5 (45-101)||(25483236-25483295)
chr5 (45-101)||(25379956-25380015)
[»] chr1 (2 HSPs)
chr1 (45-101)||(50027008-50027067)
chr1 (45-101)||(11471849-11471909)
[»] chr7 (1 HSPs)
chr7 (57-101)||(22491923-22491967)
[»] chr4 (2 HSPs)
chr4 (45-101)||(48793318-48793377)
chr4 (45-97)||(26282858-26282910)
[»] chr6 (1 HSPs)
chr6 (45-101)||(19309833-19309893)
[»] chr2 (3 HSPs)
chr2 (45-101)||(38254957-38255017)
chr2 (45-101)||(43154526-43154586)
chr2 (48-100)||(15021890-15021942)


Alignment Details
Target: chr5 (Bit Score: 46; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 25483236 - 25483295
Alignment:
Q  45 aagcttgactcatgtt---gttgttttgaaataggcaaaggggattgattgatccttgaa 101  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  25483236 aagcttgactcatgttgttgttgttttgaaataggcaaaggggattgattgatccttgaa 25483295  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 25379956 - 25380015
Alignment:
Q  45 aagcttgactcatgtt---gttgttttgaaataggcaaaggggattgattgatccttgaa 101  Q
    ||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||||    
T  25379956 aagcttgactcatgttgttgttgttttgaaaaaggcaaaggggattgattgatccttgaa 25380015  T

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Target: chr1 (Bit Score: 46; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 50027067 - 50027008
Alignment:
Q  45 aagcttgactcatgttgttgtt---ttgaaataggcaaaggggattgattgatccttgaa 101  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  50027067 aagcttgactcatgttgttgttgttttgaaataggcaaaggggattgattgatccttgaa 50027008  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 11471849 - 11471909
Alignment:
Q  45 aagcttgactcatgttgttgtt---ttgaaata-ggcaaaggggattgattgatccttgaa 101  Q
    ||||||||||||||||||||||   |||||| | |||||||||||||||||||||||||||    
T  11471849 aagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 11471909  T

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Target: chr7 (Bit Score: 41; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 22491967 - 22491923
Alignment:
Q  57 tgttgttgttttgaaataggcaaaggggattgattgatccttgaa 101  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  22491967 tgttgttgttttgaaataggcaaaggggattgattgattcttgaa 22491923  T

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Target: chr4 (Bit Score: 38; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 48793318 - 48793377
Alignment:
Q  45 aagcttgactcatgtt---gttgttttgaaataggcaaaggggattgattgatccttgaa 101  Q
    ||||||||||||||||   |||||||||||||||||||| |||||||||||| |||||||    
T  48793318 aagcttgactcatgttgttgttgttttgaaataggcaaacgggattgattgacccttgaa 48793377  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 26282910 - 26282858
Alignment:
Q  45 aagcttgactcatgttgttgttttgaaataggcaaaggggattgattgatcct 97  Q
    |||||||||||||||||||||| | ||||||||||||  ||||||||||||||    
T  26282910 aagcttgactcatgttgttgttctaaaataggcaaagatgattgattgatcct 26282858  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 19309893 - 19309833
Alignment:
Q  45 aagcttgactcatgttgttgtt---ttgaaata-ggcaaaggggattgattgatccttgaa 101  Q
    ||||||||||||||||||||||   |||||| | |||||||||||||||||||||||||||    
T  19309893 aagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 19309833  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 38255017 - 38254957
Alignment:
Q  45 aagcttgactcatgttgttgtt---ttgaaata-ggcaaaggggattgattgatccttgaa 101  Q
    ||||||||||||||||||||||   |||||| | |||||||||||||||||||||||||||    
T  38255017 aagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 38254957  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 43154526 - 43154586
Alignment:
Q  45 aagcttgactcatgttgttgtt---ttgaaata-ggcaaaggggattgattgatccttgaa 101  Q
    ||||||||||||||||||||||   |||||| | |||||||||||||||||||||||||||    
T  43154526 aagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 43154586  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 15021942 - 15021890
Alignment:
Q  48 cttgactcatgttgttgttttgaaataggcaaaggggattgattgatccttga 100  Q
    ||||||| |||||||| || |||||||| |||||||||||| |||||||||||    
T  15021942 cttgacttatgttgtttttgtgaaatagacaaaggggattggttgatccttga 15021890  T

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