View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350R-Insertion-20 (Length: 1016)
Name: NF1350R-Insertion-20
Description: NF1350R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350R-Insertion-20 |
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Alignment Details
Target: chr4 (Bit Score: 548; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 8 - 658
Target Start/End: Original strand, 40085200 - 40085860
Alignment:
| Q |
8 |
aattaaaacatatttgctctactgcgaatggcacaacttctgcttctagaataaagaaggggcttgtcgactttgatattatcatcaactccaaattcac |
107 |
Q |
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| T |
40085200 |
aattaaaacatatttgatctactgcgaatggcacaacttctgcttctagaataaagaaggggcttgtcgactttgatattatcatcaactccaaattcac |
40085299 |
T |
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| Q |
108 |
atacctcgtcttcttcaatccttccaattccaacactgcgactccgaggcactttcatcgctttcgatcccaacttaacacaattttcacctctgatcct |
207 |
Q |
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| T |
40085300 |
atacctcgtcttcttcaatccttccaattccaacactgcgactccgaggcactttcatcgcttttgatcccaacttaacacaattttcatctctgatcct |
40085399 |
T |
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| Q |
208 |
gagcgacgcggcccttacgagttccttgaaatcatcatcacttgtggttgatgttgtagagttaacactgaagctcctaggaaaggagtaaagttgcgtg |
307 |
Q |
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| T |
40085400 |
aagcgacgcggcccttacgagttccttgaaatcatcatcacttatggtcgatgttgtagagttaacactgaagctcctaggaaaggagtaaagttgcgta |
40085499 |
T |
|
| Q |
308 |
ggacatcccatggttgcatgatctacataggcaaaatcacgagaacattggatcatgccattgacatacatgtcctttacctttaccaggaaccttaagg |
407 |
Q |
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| T |
40085500 |
ggacatcccatggttgcatgatctacataggcaaaatcacgagaacattggatcatgccattgacatacatgtcctttaactttaccaggaaccttaagg |
40085599 |
T |
|
| Q |
408 |
gtgccttcatgtacctggtgagtttgcttcctttgctcttatcnnnnnnngtcatgtttcaagattacttcaaaaattggcaattagagctagggccctt |
507 |
Q |
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| T |
40085600 |
gtgccttcatgtacctggtgagcttgcttcctttgctcttatctttttttgtcatgtttcaagattacttcaaaaaatggcaattagagttagggccctt |
40085699 |
T |
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| Q |
508 |
aatatagataaagaaaatggacagctagctgtattattagcagcttctgtagggaagcttaagttacacgacagataacttcaagctgagttactctatt |
607 |
Q |
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| T |
40085700 |
aatatagataaagaaaatggacagctagctgtattattagcagcttctgtagggaagcttaagttacacgacagataacttcaagctgagttactctatt |
40085799 |
T |
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| Q |
608 |
--atac--------atatattaaatttcacaaattaaataaatgattaccactgtatcttg |
658 |
Q |
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| T |
40085800 |
taatactttattatacatattaactttcacaaattaaataaatgattaccactgtatcttg |
40085860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 680 - 826
Target Start/End: Original strand, 40085890 - 40086036
Alignment:
| Q |
680 |
gaaaagccaaaaaagatattattaaataggatggtaccaaggtaccaccaaaatgttgaactcatctaaaataattttgtggacccaattaaagccacgt |
779 |
Q |
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| T |
40085890 |
gaaaagccaaaaaagatattattaaatagaatggtaccaaagtaccaccaaaatgttgaactcatctaaagtaattttgtggatccaattaaagccacgt |
40085989 |
T |
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| Q |
780 |
tattctgaagcaactcactcatattttactccaatggtgcaactcta |
826 |
Q |
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| T |
40085990 |
tattctgaagcaactcactcatattttactccaatagtgcaactcta |
40086036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 40081081 - 40081154
Alignment:
| Q |
348 |
gagaacattggatcatgccattgacatacatgtcctttacctttaccaggaaccttaagggtgccttcatgtac |
421 |
Q |
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||||||| |||||||||||| ||| |||| ||||||||||||| || |||||||| ||||||||||||||| |
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| T |
40081081 |
gagaacaatggatcatgccacggacgtacaagtcctttacctttgtcaacaaccttaaaggtgccttcatgtac |
40081154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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