View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1350R-Insertion-3 (Length: 162)
Name: NF1350R-Insertion-3
Description: NF1350R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350R-Insertion-3 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 130; Significance: 1e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 515723 - 515570
Alignment:
| Q |
9 |
acatgtgctgccgttgccgtcaaaattccaaagttgcattcaagggtttattatttcccacaaggtcacttagaaaatgcttctccttcttcttcctcca |
108 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
515723 |
acatgtgctaccgctgccgtcaaaattccaaagttgcattcaagggtttattatttcccacaaggtcacctagaaaacgcttctccttcttcttcctcca |
515624 |
T |
|
| Q |
109 |
ttactcacacacactcttttctacaaagctttcgtcctttcactccttgtattg |
162 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
515623 |
ttactcacacacactcttttctacaaagttttcgtcctttcactctttgtattg |
515570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 560627 - 560701
Alignment:
| Q |
23 |
tgccgtcaaaattccaaagttgcattcaagggtttattatttcccacaaggtcacttagaaaatgcttctccttc |
97 |
Q |
| |
|
||||||| |||| |||||||||||||| || ||||| ||||| |||||||| ||||||||| |||||||| |||| |
|
|
| T |
560627 |
tgccgtccaaataccaaagttgcattccagagtttactattttccacaaggccacttagaacatgcttcttcttc |
560701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 8823054 - 8823119
Alignment:
| Q |
25 |
ccgtcaaaattccaaagttgcattcaagggtttattatttcccacaaggtcacttagaaaatgctt |
90 |
Q |
| |
|
||||||||||||| || | ||||||| |||||| |||||||| ||||||||||||||| |||||| |
|
|
| T |
8823054 |
ccgtcaaaattcctaaacttcattcaaaggtttactatttcccgcaaggtcacttagaacatgctt |
8823119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 20229263 - 20229322
Alignment:
| Q |
38 |
aaagttgcattcaagggtttattatttcccacaaggtcacttagaaaatgcttctccttc |
97 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||||| ||||||||| |||||||| |||| |
|
|
| T |
20229263 |
aaagttgcattcaagagtttactattttccacaaggccacttagaatatgcttcttcttc |
20229322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University