View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1350R-Insertion-5 (Length: 333)
Name: NF1350R-Insertion-5
Description: NF1350R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350R-Insertion-5 |
 | |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 7128326 - 7128639
Alignment:
| Q |
20 |
tgaataaacccttgtgcaatccaaagtcgaatcaatgttgtttttggaatgaaatagtcttttggaaacaaagaacaaaaagcaaagcactttttcaaat |
119 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
7128326 |
tgaacaaacccttgtgcaatccaaactcgaatcaatgttgttttaggaattaaatagtcttttgggaacaatgaacaaaaagcaaagcactttttcaaat |
7128425 |
T |
|
| Q |
120 |
gaaatggtagatgatcataacttagtttgataagctgtaaaattttattatcaccttgttcatcaatcttcataagatctttgttcttgaatgttgacca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
7128426 |
gaaatggtagatgatcataacttagtttgataagctgtaaaattttattatcaccttgttcatcaattttcataagatctatgttcttgaatgttgacca |
7128525 |
T |
|
| Q |
220 |
atcctccttctgcatggaatacattaagcttccaatggttctgatggcgagaggaacccctgaacattttttcacaatttccttgccaattgacaccaat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7128526 |
atcctccttctgcatggaatacattaagcttccaatgcttctgatggcgagaggaacccctgaacattttttcacaatttccttgccaattgacaccaat |
7128625 |
T |
|
| Q |
320 |
tcctcattctctag |
333 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7128626 |
tcctcattctctag |
7128639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 7721601 - 7721913
Alignment:
| Q |
20 |
tgaataaacccttgtgcaatccaaagtcgaatcaatgttgtttttggaatgaaatagtcttttggaaacaaagaacaaaaagcaaagcactttttcaaat |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7721601 |
tgaacaaacccttgtgcaatccaaagtcgaatcaatgttgtttt-ggaattaaatagtcttttggaaacaaagaacaaaaagcaaagcactttttcaaat |
7721699 |
T |
|
| Q |
120 |
gaaatggtagatgatcataacttagtttgataagctgtaaaattttattatcaccttgttcatcaatcttcataagatctttgttcttgaatgttgacca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
7721700 |
gaaatggtagatgatcataacttagtttgataagctgtaaaattttattatcaccttgttcatcaattttcataagatctttgttcttgaatgttgacca |
7721799 |
T |
|
| Q |
220 |
atcctccttctgcatggaatacattaagcttccaatggttctgatggcgagaggaacccctgaacattttttcacaatttccttgccaattgacaccaat |
319 |
Q |
| |
|
||||| |||| ||||||||||||| |||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7721800 |
atccttcttcggcatggaatacatcaagcttccaatgcttctaatggcgagcggaacccctgaacattttttcacaatttccttgccaattgacaccaat |
7721899 |
T |
|
| Q |
320 |
tcctcattctctag |
333 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7721900 |
tcctcattctctag |
7721913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 7520878 - 7520568
Alignment:
| Q |
20 |
tgaataaacccttgtgcaatccaaagtcgaatcaatgttgtttttggaatgaaatagtcttttggaaacaaagaacaaaaagcaaagcactttttcaaat |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
7520878 |
tgaacaaacccttgtgcaatccaaagtcgaatcaatgttgttttatgaatgaaatagtcttttggaaacaatgaacaaaaagcaaagcactttttcaaat |
7520779 |
T |
|
| Q |
120 |
gaaatggtagatgatcataacttagtttgataagctgtaaaattttattatcaccttgttcatcaatcttcataagatctttgttcttgaatgttgacca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
7520778 |
gaaatggtagatgatcataacttagtttgataagctgtaaaattttat---caccttgttcatcaatttgcataagatctttgttcttgaatgttgacca |
7520682 |
T |
|
| Q |
220 |
atcctccttctgcatggaatacattaagcttccaatggttctgatggcgagaggaacccctgaacattttttcacaatttccttgccaattgacaccaat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7520681 |
atcctccttctgcatggaatacattaagcttccaatgcttctgatggcgagaggaacccctgaacatttcttcacaatttccttgccaattgacaccaat |
7520582 |
T |
|
| Q |
320 |
tcctcattctctag |
333 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7520581 |
tcctcattctctag |
7520568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 7528928 - 7528618
Alignment:
| Q |
20 |
tgaataaacccttgtgcaatccaaagtcgaatcaatgttgtttttggaatgaaatagtcttttggaaacaaagaacaaaaagcaaagcactttttcaaat |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7528928 |
tgaacaaacccttgtgcaatccaaagtcgaatcaatgttgtttttggaatgaaatagtcttttggaaacaaagaacaaaaagcaaagcactttttcaaat |
7528829 |
T |
|
| Q |
120 |
gaaatggtagatgatcataacttagtttgataagctgtaaaattttattatcaccttgttcatcaatcttcataagatctttgttcttgaatgttgacca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
7528828 |
gaaatggtagatgatcataacttagtttgataagctgtaaaatt---ttatcaccttgttcatcaatttgcataagatctttgttcttgaatgttgacca |
7528732 |
T |
|
| Q |
220 |
atcctccttctgcatggaatacattaagcttccaatggttctgatggcgagaggaacccctgaacattttttcacaatttccttgccaattgacaccaat |
319 |
Q |
| |
|
||||||||||| | || |||||||||||||||||||| ||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7528731 |
atcctccttctccttgaaatacattaagcttccaatgcttctgatggcgagaggaacacccgcacattttttcacaatttccttgccaattgacaccaat |
7528632 |
T |
|
| Q |
320 |
tcctcattctctag |
333 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7528631 |
tcctcattctctag |
7528618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 7495211 - 7494901
Alignment:
| Q |
20 |
tgaataaacccttgtgcaatccaaagtcgaatcaatgttgtttttggaatgaaatagtcttttggaaacaaagaacaaaaagcaaagcactttttcaaat |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7495211 |
tgaacaaacccttgtgcaatccaaagtcgaatcaattttgttttatcaattaaatagtcttttggaaacaatgaacaaaaagcaaagcactttttcaaat |
7495112 |
T |
|
| Q |
120 |
gaaatggtagatgatcataacttagtttgataagctgtaaaattttattatcaccttgttcatcaatcttcataagatctttgttcttgaatgttgacca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||| |||||| |
|
|
| T |
7495111 |
gaaatggtagatgatcataacttagtttgataagctgtaaaattttat---caccttgttcatcaatttgcataagatctttgttcttgaatgatgacca |
7495015 |
T |
|
| Q |
220 |
atcctccttctgcatggaatacattaagcttccaatggttctgatggcgagaggaacccctgaacattttttcacaatttccttgccaattgacaccaat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7495014 |
atcctccttctgcatggaatacattaagcttccaatgcttctgatggcgagaggaacccctgaacatttcttcacaatttccttgccaattgacaccaat |
7494915 |
T |
|
| Q |
320 |
tcctcattctctag |
333 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7494914 |
tcctcattctctag |
7494901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 7482812 - 7482502
Alignment:
| Q |
20 |
tgaataaacccttgtgcaatccaaagtcgaatcaatgttgtttttggaatgaaatagtcttttggaaacaaagaacaaaaagcaaagcactttttcaaat |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7482812 |
tgaacaaacccttgtgcaatccaaagtcgaatcaatgttattttacaaattaaaaagtcttttggaaacaatgaacaaaaagcaaagcactttttcaaat |
7482713 |
T |
|
| Q |
120 |
gaaatggtagatgatcataacttagtttgataagctgtaaaattttattatcaccttgttcatcaatcttcataagatctttgttcttgaatgttgacca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7482712 |
gaaatggtagatgatcataacttagtttgataagctgaaaaattttattatcaccttgttcatcaattttcataagatctttgttcttgaatgttgacca |
7482613 |
T |
|
| Q |
220 |
atcctccttctgcatggaatacattaagcttccaatggttctgatggcgagaggaacccctgaacattttttcacaatttccttgccaattgacaccaat |
319 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||| |||| |||||||||||||| || | |||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
7482612 |
atcctccttccgcatggaatagattaagcttccaatgcttctaatggcgagaggaacacccgcacattttttcacaatttccttgccaactgacacaaat |
7482513 |
T |
|
| Q |
320 |
tcctcattctc |
330 |
Q |
| |
|
||||||||||| |
|
|
| T |
7482512 |
tcctcattctc |
7482502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 29 - 316
Target Start/End: Original strand, 16749613 - 16749903
Alignment:
| Q |
29 |
ccttgtgcaatccaaagtcgaatcaatgttgtttttggaatgaaatagtcttttggaaacaaagaacaaaaagcaaagcactttttcaaatgaaatggta |
128 |
Q |
| |
|
|||||||||||||||||||||||||| || | || ||| ||||||||||||||||||||| ||||| |||||||||||||||| || ||| |||| |
|
|
| T |
16749613 |
ccttgtgcaatccaaagtcgaatcaactttttcttctcaattcgatagtcttttggaaacaaagagcaaaatgcaaagcactttttcagataaaagggta |
16749712 |
T |
|
| Q |
129 |
gatgatcataacttagtttgataagctgtaaaattttattatcaccttgttcatcaatcttcataagatctttgttcttgaatgttgaccaatcctcct- |
227 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||| |||| || |||||||| || |||||||||||||||||||| | ||||||||| || |
|
|
| T |
16749713 |
gatgatcataacttagtttgataagttgaaaaattttattgccaccctgctcatcaattttgataagatctttgttcttgaagttcaaccaatccttctc |
16749812 |
T |
|
| Q |
228 |
--tctgcatggaatacattaagcttccaatggttctgatg-gcgagaggaacccctgaacattttttcacaatttccttgccaattgacacc |
316 |
Q |
| |
|
| | ||| ||| ||||||| |||||||| || | ||| || ||||| ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
16749813 |
agtttccatagaaaacattaaacttccaatactt-ttatgagcaagaggtacccctgaacatttttttgaaatttccttgccaattgacacc |
16749903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 32727237 - 32727274
Alignment:
| Q |
272 |
ggaacccctgaacattttttcacaatttccttgccaat |
309 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
32727237 |
ggaacccctgcacattttttcacaatttctttgccaat |
32727274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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