View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1350R-Insertion-8 (Length: 365)

Name: NF1350R-Insertion-8
Description: NF1350R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1350R-Insertion-8
NF1350R-Insertion-8
[»] chr1 (1 HSPs)
chr1 (9-365)||(6588597-6588953)


Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 9 - 365
Target Start/End: Complemental strand, 6588953 - 6588597
Alignment:
Q  9 tatataatatcaactaaatcaacacatttccaatagtcccatttgaaattcaaaatatatagtagtagaaaatagtgtgatcttaaatttaatctaccat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6588953 tatataatatcaactaaatcaacacatttccaatagtcccatttgaaattcaaaatatatagtagtagaaaatagtgtgatcttaaatttaatctaccat 6588854  T
Q  109 ggctatcgacagtcctctactgaataacagtgtcaactctcctcctagtgttgttcatcatgaagaagagaagccactgaaaattgttcacaaaattggg 208  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6588853 ggctatcgacagtcctctactgaataacggtgtcaactctcctcctagtgttgttcatcatgaagaagagaagccactgaaaattgttcacaaaattggg 6588754  T
Q  209 gtggagtcgaagaagctatggaaaatagccggtccaacaatcttaacttctttatctcagtactcgcttggtgcattcacttctacgtttgttggccatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6588753 gtggagtcgaagaagctatggaaaatagccggtccaacaatcttaacttctttatctcagtactcgcttggtgcattcacttctacgtttgttggccatg 6588654  T
Q  309 ttaacgagctcgatcttgcagctttttctgttgaaaattctgttattgctggtttcg 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6588653 ttaacgagctcgatcttgcagctttttctgttgaaaattctgttattgctggtttcg 6588597  T

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