View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350R-Insertion-9 (Length: 410)
Name: NF1350R-Insertion-9
Description: NF1350R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350R-Insertion-9 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 143 - 410
Target Start/End: Original strand, 34140950 - 34141217
Alignment:
| Q |
143 |
aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34140950 |
aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact |
34141049 |
T |
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| Q |
243 |
caaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaact |
342 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34141050 |
caaagggactccatggtttgtgactttaaagaatccccacgctttgcatgcacttccaatctccttgactaagctttcaatagcagatggatttggaact |
34141149 |
T |
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| Q |
343 |
tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttgg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34141150 |
tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttgg |
34141217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 143 - 410
Target Start/End: Original strand, 34137287 - 34137554
Alignment:
| Q |
143 |
aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact |
242 |
Q |
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||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |
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| T |
34137287 |
aaccagttggattgatttcatctctagcaaccttcctcttctcctccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagact |
34137386 |
T |
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| Q |
243 |
caaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaact |
342 |
Q |
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| T |
34137387 |
cgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcacttccaatttccttcactaagttttcaatatcagatggatttggaact |
34137486 |
T |
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| Q |
343 |
tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttgg |
410 |
Q |
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||||||||||||||||||||||| |||||| | ||||| ||||||||||| |||| ||||||||||| |
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| T |
34137487 |
tcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattgagagttttgg |
34137554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 143 - 410
Target Start/End: Original strand, 34133376 - 34133643
Alignment:
| Q |
143 |
aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact |
242 |
Q |
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||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||| |
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| T |
34133376 |
aaccagtaggattgacctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagaagcttcctcaagtctctgccttagact |
34133475 |
T |
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| Q |
243 |
caaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaact |
342 |
Q |
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||||||||||||||||||||| |||| |||||| |||||||| |||| |||||||||||||||||| || ||| |||||||| ||||||||||||||||| |
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| T |
34133476 |
caaagggactccatggtttgtgacttgaaagaaaccccactccttgcttgcacttccaatctccttcaccaagttttcaatatcagatggatttggaact |
34133575 |
T |
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| Q |
343 |
tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttgg |
410 |
Q |
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||| ||| | ||||||||||| |||||||| ||||| ||||||||||| |||| |||||||||||| |
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| T |
34133576 |
gcatggtgaagaattggagagaggtcaatttcgggaattcctttggcttcgatgatggagagttttgg |
34133643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 155 - 410
Target Start/End: Original strand, 34127115 - 34127370
Alignment:
| Q |
155 |
tgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagactcaaagggactcc |
254 |
Q |
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| T |
34127115 |
tgatctcatctctggcaaccttcattttctcctccaaactttgagcaaagaacaatctagcagcttcatcaagtctttgcctaatactcaaagggacctc |
34127214 |
T |
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| Q |
255 |
atggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaacttcattgtggaat |
354 |
Q |
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|||||||||||||| |||||| ||||| || ||||||||||||||||||| ||| || ||||| |||||||||||| ||| | ||||||||| ||||||| |
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| T |
34127215 |
atggtttgtaacttgaaagaagccccattccttgcatgcacttccaatcttcttcaccaagctatcaatagcagattgatcttgaacttcatggtggaat |
34127314 |
T |
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| Q |
355 |
attggagagagatcaatttctggaatacctttggcttctatgagggagagttttgg |
410 |
Q |
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||||| ||||| |||||||| ||||| |||| |||||| |||| ||| |||||||| |
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| T |
34127315 |
attggtgagaggtcaatttcgggaattccttcggcttcaatgatggatagttttgg |
34127370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 34140342 - 34140418
Alignment:
| Q |
67 |
taatttatatggttaaaacaattcaaatatattcttaattatgtttgatgaattaatcgttcaaattattataaaaa |
143 |
Q |
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| T |
34140342 |
taatttatatggttaaaacaattcaaatatattcttaattatgtttgatgaattaatcgttcaaattattataaaaa |
34140418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 40333079 - 40333025
Alignment:
| Q |
7 |
caaattgtatgttcgtgtggctctcgtgtgctgactttgtcttgctgtatagcag |
61 |
Q |
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| T |
40333079 |
caaattgtatgttcgtgtggctctcgtgtgctgactttgtcgtgctgtatagcag |
40333025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 48583945 - 48583989
Alignment:
| Q |
21 |
gtgtggctctcgtgtgctgactttgtcttgctgtatagcagcgct |
65 |
Q |
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| T |
48583945 |
gtgtggctttcgtgtgttgattttgtcgtgctgtatagcagcgct |
48583989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 13066826 - 13066886
Alignment:
| Q |
7 |
caaattgtatgttcgtgtggctctcgtgtgctgactttgtcttgctgtatagcagcgctct |
67 |
Q |
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| T |
13066826 |
caaattgtatgttcgtgtggctctcgtgtgctgactttgtcatgctgtatagcagtgctct |
13066886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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