View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350_high_10 (Length: 504)
Name: NF1350_high_10
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Complemental strand, 25575079 - 25574678
Alignment:
| Q |
13 |
aatatctgtattgtgattccatttctcccatccatcaaaaccttctttcctttctctttcgcccaatctgtcaaaaatcctcttaccttgcaactcatag |
112 |
Q |
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| T |
25575079 |
aatatctgtattgtgattccatttctcccatccatcaaaaccttctttcctttctctttcgcccaatttgtcaaaaatcctcttaccttgcaactcatag |
25574980 |
T |
|
| Q |
113 |
gtatttccttttctttcaccacccctatcaaattttgcaaaatgtgactccggttgttgtttggaccacatcaaagtcaacagttccccacatatctttc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25574979 |
gtatttccttttctttcaccacccctatcaaattttgcaaaatgtgactccggttgttgtttggaccacatcaaagtcaacagttccccacatatctttg |
25574880 |
T |
|
| Q |
213 |
tacctttcaattctctcaaagctttctccgcatccgaacggaaatcaaacaccacaaaaccataaccttcttttttcacctgaacattacaatgcccaaa |
312 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25574879 |
tacctttcaattccctcaaagctttctccgcatccaaacggaaatcaaacaccacaaaaccataaccttcttttttcacctgaacattacaacgcccaaa |
25574780 |
T |
|
| Q |
313 |
tctaccaaaaactcgctcaagttcatctctacaaacacgttccgatagtttaccgaaatacaacgacatctacaataataaacaaacacatttaatagta |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25574779 |
tctaccaaaaactcgctcaagttcatctctacaaacacgttccgatagtttaccgaaatacaacgacatctacaataataaacaaacacatttaatagta |
25574680 |
T |
|
| Q |
413 |
ag |
414 |
Q |
| |
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|| |
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|
| T |
25574679 |
ag |
25574678 |
T |
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