View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1350_high_11 (Length: 500)

Name: NF1350_high_11
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1350_high_11
NF1350_high_11
[»] chr3 (22 HSPs)
chr3 (205-489)||(46491073-46491357)
chr3 (30-187)||(46491384-46491541)
chr3 (324-439)||(46480210-46480325)
chr3 (321-440)||(51944306-51944425)
chr3 (333-424)||(46498380-46498471)
chr3 (329-433)||(46506843-46506952)
chr3 (335-432)||(47413797-47413894)
chr3 (320-440)||(5160693-5160813)
chr3 (336-427)||(46553795-46553886)
chr3 (320-438)||(46474341-46474459)
chr3 (335-427)||(46532342-46532434)
chr3 (320-427)||(5156674-5156781)
chr3 (336-427)||(46544913-46545004)
chr3 (320-422)||(46484474-46484576)
chr3 (326-426)||(46236382-46236482)
chr3 (370-425)||(46539443-46539498)
chr3 (352-424)||(46526031-46526103)
chr3 (326-427)||(46535370-46535471)
chr3 (124-184)||(46498700-46498760)
chr3 (358-433)||(16025901-16025976)
chr3 (326-424)||(46548602-46548700)
chr3 (370-427)||(4581015-4581072)
[»] chr4 (2 HSPs)
chr4 (329-433)||(15556432-15556536)
chr4 (336-430)||(35155835-35155929)
[»] chr7 (7 HSPs)
chr7 (323-425)||(17736950-17737052)
chr7 (325-425)||(17718537-17718637)
chr7 (335-425)||(17699604-17699694)
chr7 (325-425)||(17708713-17708813)
chr7 (325-425)||(17736367-17736467)
chr7 (335-425)||(16722590-16722680)
chr7 (325-416)||(16730588-16730679)
[»] chr8 (3 HSPs)
chr8 (326-437)||(9675300-9675411)
chr8 (326-437)||(9692322-9692433)
chr8 (335-424)||(21463785-21463874)
[»] chr2 (2 HSPs)
chr2 (326-429)||(20168618-20168721)
chr2 (326-429)||(20359563-20359666)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 205 - 489
Target Start/End: Complemental strand, 46491357 - 46491073
Alignment:
Q  205 tctatgaggaaacatatggaaaggcaggtaaatcatctacctacattctcattttactaacatcatattgtcaggaaaaataaattccctatttatctat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46491357 tctatgaggaaacatatggaaaggcaggtaaatcatctacctacattctcattttactaacatcatattgtcaggaaaaataaattccctatttatctat 46491258  T
Q  305 tggcgagtgtggcacgctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaa 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46491257 tggcgagtgtggcacgctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaa 46491158  T
Q  405 agggtggtcagctacaaagtctagtcgagttggaaaacccatgccactgctagtcattacttcagttacggtggctgcaacagct 489  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||    
T  46491157 agggtggccagccacaaagtctagtcgagttggaaaacccatgccactgctagtgaatacttcagttgcggtggctgcaacagct 46491073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 46491541 - 46491384
Alignment:
Q  30 cgtgtgcccaaccagatttaatgtttaccactatattccttctgattctatatatatccttccaattaccttggcaggtgttagatatcatgagttgtta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46491541 cgtgtgcccaaccagatttaatgtttaccactatattccttctgattctatatatatccttccaattaccttggcaggtgttagatatcatgagttgtta 46491442  T
Q  130 aagaaattaaaggaagtctaccaaaatttattaaaatacacaagtatgaactcttcgg 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46491441 aagaaattaaaggaagtctaccaaaatttattaaaatacacaagtatgaactcatcgg 46491384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 324 - 439
Target Start/End: Complemental strand, 46480325 - 46480210
Alignment:
Q  324 aaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaag 423  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  46480325 aaatcacccagcaagaggattgagcacctgtccaacaaagatgattgttccggtcaagtcttctctaatcataaataagaaagggtggtcagctacaaag 46480226  T
Q  424 tctagtcgagttggaa 439  Q
    ||||| |||| |||||    
T  46480225 tctagccgaggtggaa 46480210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 321 - 440
Target Start/End: Complemental strand, 51944425 - 51944306
Alignment:
Q  321 ctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctaca 420  Q
    |||| ||||||| | ||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  51944425 ctaagatcacccggtaagtgggttgagcacctgtccaacaaagatgattgttccagtcaaatcttctctaatcagaaataagaaagggtggtcagctaca 51944326  T
Q  421 aagtctagtcgagttggaaa 440  Q
    ||||||||| ||| ||||||    
T  51944325 aagtctagttgagatggaaa 51944306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 333 - 424
Target Start/End: Complemental strand, 46498471 - 46498380
Alignment:
Q  333 agcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 424  Q
    |||||||||||||| |||||| |||||||||| ||| ||||| ||||| |||||||| || ||||| ||||| |||||||||||||||||||    
T  46498471 agcaagaggattgagcacctgcccaacaaagacgatagttccggtcaaatcttctctgataataaataagaatgggtggtcagctacaaagt 46498380  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 433
Target Start/End: Original strand, 46506843 - 46506952
Alignment:
Q  329 acccagcaagaggattgaacacctgtccaacaaa-----gatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaag 423  Q
    |||||||||||||||||| |||||||||||||||     || ||||||||| ||| | |||||| |||| | ||| ||||| ||||||||||||||||||    
T  46506843 acccagcaagaggattgagcacctgtccaacaaattaaagaggattgttccggtccaatcttctttaattagaaataagaatgggtggtcagctacaaag 46506942  T
Q  424 tctagtcgag 433  Q
    ||||||||||    
T  46506943 tctagtcgag 46506952  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 432
Target Start/End: Original strand, 47413797 - 47413894
Alignment:
Q  335 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctagtcga 432  Q
    |||||||||||| ||| ||||||||||||| ||||||| | ||  | ||||||||||| | ||| |||||||||||||| ||||||||||||||||||    
T  47413797 caagaggattgagcacatgtccaacaaagaggattgtttcggttgaatcttctctaattagaaataagaaagggtggtcggctacaaagtctagtcga 47413894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 320 - 440
Target Start/End: Complemental strand, 5160813 - 5160693
Alignment:
Q  320 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 419  Q
    ||||| ||||| || ||||||||||||  || |||||||||||||  || ||||||||| | ||||||||||||| ||| ||||||||||||||||||||    
T  5160813 gctaagatcactcatcaagaggattgagtacttgtccaacaaagagaatggttccagtccaatcttctctaatcagaaataagaaagggtggtcagctac 5160714  T
Q  420 aaagtctagtcgagttggaaa 440  Q
     || || ||  ||||||||||    
T  5160713 gaaatcaagctgagttggaaa 5160693  T

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Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 427
Target Start/End: Original strand, 46553795 - 46553886
Alignment:
Q  336 aagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 427  Q
    |||||||||||  || || ||||||||||  ||||| |||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  46553795 aagaggattgagaacttggccaacaaagagtattgtaccagacaaatcttctctaataaaaaacaagaaagggtggtcagctacaaagtcta 46553886  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 438
Target Start/End: Complemental strand, 46474459 - 46474341
Alignment:
Q  320 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 419  Q
    ||||| |||||||| |||||||||| | ||||||||||||||||||||||||||| | ||| || |||||||| | | | ||||| ||||| ||| ||||    
T  46474459 gctaagatcacccatcaagaggattaagcacctgtccaacaaagatgattgttccggccaaatcatctctaattagatataagaatgggtgatcaactac 46474360  T
Q  420 aaagtctagtcgagttgga 438  Q
    ||| || | ||||||||||    
T  46474359 aaaatccattcgagttgga 46474341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 427
Target Start/End: Complemental strand, 46532434 - 46532342
Alignment:
Q  335 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 427  Q
    |||||||||||| ||| || ||||||||||  ||||| |||| ||| || ||||| |||| ||||| ||||||||||||||||||||||||||    
T  46532434 caagaggattgagcacttggccaacaaagagtattgtaccagacaaatcgtctcttatcaaaaacatgaaagggtggtcagctacaaagtcta 46532342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 320 - 427
Target Start/End: Complemental strand, 5156781 - 5156674
Alignment:
Q  320 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 419  Q
    ||||| ||||| || |||| ||||||| ||| |||||||||||||  || ||||||||| | | ||||||||| | ||| ||||||||||| ||||||||    
T  5156781 gctaagatcactcatcaagtggattgagcacttgtccaacaaagagaatggttccagtcgagttttctctaattagaaataagaaagggtgatcagctac 5156682  T
Q  420 aaagtcta 427  Q
    ||||||||    
T  5156681 aaagtcta 5156674  T

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Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 427
Target Start/End: Complemental strand, 46545004 - 46544913
Alignment:
Q  336 aagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 427  Q
    |||||||||||  || ||||||| |||||  |  ||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||    
T  46545004 aagaggattgagaacttgtccaataaagagtaccgttccagacaaatcttctctgatcaaaaacaagaaagggtggtcagctacaaagtcta 46544913  T

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Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 422
Target Start/End: Complemental strand, 46484576 - 46484474
Alignment:
Q  320 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 419  Q
    ||||| |||||||| ||||| |||| | ||| ||||||||||||||||||||||||| ||| || |||||||| | | | ||||| ||||| ||||||||    
T  46484576 gctaagatcacccatcaagatgattaagcacatgtccaacaaagatgattgttccagccaaatcatctctaattagatataagaatgggtgatcagctac 46484477  T
Q  420 aaa 422  Q
    |||    
T  46484476 aaa 46484474  T

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Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 326 - 426
Target Start/End: Original strand, 46236382 - 46236482
Alignment:
Q  326 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 425  Q
    |||| ||| ||| |||||||| |||||||||| |||||| ||||||||| ||| |  |||||||||| | ||| | ||||||||| ||||||||||||||    
T  46236382 atcatccaacaacaggattgagcacctgtccagcaaagaggattgttccggtcgaaacttctctaattagaaataggaaagggtgatcagctacaaagtc 46236481  T
Q  426 t 426  Q
    |    
T  46236482 t 46236482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 425
Target Start/End: Complemental strand, 46539498 - 46539443
Alignment:
Q  370 gttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 425  Q
    ||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||    
T  46539498 gttccagacaaatcttctctgatcaaaaacaagaaagggtggtcagctacaaagtc 46539443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 46526031 - 46526103
Alignment:
Q  352 tgtccaacaaagatgatt-gttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 424  Q
    ||||||||||||| |||| ||||||||||| ||||||||||| | |||||||||| ||||||| ||||||||||    
T  46526031 tgtccaacaaagaggatttgttccagtcaaatcttctctaattagaaacaagaaa-ggtggtctgctacaaagt 46526103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 427
Target Start/End: Complemental strand, 46535471 - 46535370
Alignment:
Q  326 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 425  Q
    |||| ||||||||||||||   ||| || |||||||||   ||||| ||||  || |||||||| |||| |||||||||||| |||||||||||||||||    
T  46535471 atcatccagcaagaggattatgcacttgcccaacaaagtgtattgtaccagataaatcttctcttatcaaaaacaagaaaggatggtcagctacaaagtc 46535372  T
Q  426 ta 427  Q
    ||    
T  46535371 ta 46535370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 46498760 - 46498700
Alignment:
Q  124 ttgttaaagaaattaaaggaagtctaccaaaatttattaaaatacacaagtatgaactctt 184  Q
    ||||||||||||||| |||||||||  ||||| ||||||| |||||||| |||||||||||    
T  46498760 ttgttaaagaaattagaggaagtctgtcaaaaattattaacatacacaattatgaactctt 46498700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 358 - 433
Target Start/End: Complemental strand, 16025976 - 16025901
Alignment:
Q  358 acaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctagtcgag 433  Q
    ||||||| ||||||| | || || ||||||||||| | ||| ||||||||||||||||||||||| |||| |||||    
T  16025976 acaaagaggattgtttcggttaaatcttctctaattagaaataagaaagggtggtcagctacaaaatctactcgag 16025901  T

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Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 424
Target Start/End: Original strand, 46548602 - 46548700
Alignment:
Q  326 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 424  Q
    |||||||| ||| |||||||| ||| ||||||| |||||  || |||||||   | |||||| | |||||||||| |||||| ||||||||||||||||    
T  46548602 atcacccaacaaaaggattgagcacttgtccaataaagagtatagttccagaagaatcttctttgatcataaacatgaaaggatggtcagctacaaagt 46548700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 4581015 - 4581072
Alignment:
Q  370 gttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 427  Q
    ||||||| ||| |||||||  |||| ||||||||||||||||||||| ||||| ||||    
T  4581015 gttccagacaaatcttctcggatcaaaaacaagaaagggtggtcagccacaaattcta 4581072  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 329 - 433
Target Start/End: Complemental strand, 15556536 - 15556432
Alignment:
Q  329 acccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctag 428  Q
    ||||||||| |||||| | ||||||||||||||||| |||||| || ||||| |||||||| || | ||| ||||| |||||||||||||||||||||||    
T  15556536 acccagcaaaaggattaagcacctgtccaacaaagaggattgtgccggtcaaatcttctcttattagaaataagaatgggtggtcagctacaaagtctag 15556437  T
Q  429 tcgag 433  Q
    |||||    
T  15556436 tcgag 15556432  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 430
Target Start/End: Complemental strand, 35155929 - 35155835
Alignment:
Q  336 aagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctagtc 430  Q
    |||||| |||||||| |||||  |||||| |||||||   ||||| ||||||||||| | ||| ||||||||||| ||||||| |||||||||||    
T  35155929 aagagggttgaacacttgtccggcaaagaggattgtttgggtcaaatcttctctaattaaaaataagaaagggtgatcagctataaagtctagtc 35155835  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 425
Target Start/End: Complemental strand, 17737052 - 17736950
Alignment:
Q  323 aaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaa 422  Q
    ||||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || ||||||||||||||||||||    
T  17737052 aaaatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaa 17736953  T
Q  423 gtc 425  Q
    |||    
T  17736952 gtc 17736950  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 425
Target Start/End: Complemental strand, 17718637 - 17718537
Alignment:
Q  325 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 424  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || ||||||||||||||||||||||    
T  17718637 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagt 17718538  T
Q  425 c 425  Q
    |    
T  17718537 c 17718537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 17699694 - 17699604
Alignment:
Q  335 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 425  Q
    |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||||||||||||    
T  17699694 caagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagtc 17699604  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 425
Target Start/End: Complemental strand, 17708813 - 17708713
Alignment:
Q  325 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 424  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||| |||||||    
T  17708813 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagt 17708714  T
Q  425 c 425  Q
    |    
T  17708713 c 17708713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 425
Target Start/End: Complemental strand, 17736467 - 17736367
Alignment:
Q  325 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 424  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||| |||||||    
T  17736467 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagt 17736368  T
Q  425 c 425  Q
    |    
T  17736367 c 17736367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 16722680 - 16722590
Alignment:
Q  335 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 425  Q
    |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||| ||||||||    
T  16722680 caagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagtc 16722590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 416
Target Start/End: Complemental strand, 16730679 - 16730588
Alignment:
Q  325 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagc 416  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || ||||||||||||||    
T  16730679 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagc 16730588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 437
Target Start/End: Original strand, 9675300 - 9675411
Alignment:
Q  326 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 425  Q
    |||||||| ||||||||||||  ||||||||  ||||||||||||||   ||| | ||||||||||| | ||| | ||||||||| || |||| ||||||    
T  9675300 atcacccaacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaataggaaagggtgatcggctataaagtc 9675399  T
Q  426 tagtcgagttgg 437  Q
    || || ||||||    
T  9675400 tattccagttgg 9675411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 437
Target Start/End: Original strand, 9692322 - 9692433
Alignment:
Q  326 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 425  Q
    |||||||| ||||||||||||  ||||||||  |||||||||| |||   ||||| ||||||||||| | ||| | ||||||||| || |||| ||||||    
T  9692322 atcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcaaatcttctctaattagaaataggaaagggtgatcggctataaagtc 9692421  T
Q  426 tagtcgagttgg 437  Q
    || || ||||||    
T  9692422 tattccagttgg 9692433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 424
Target Start/End: Original strand, 21463785 - 21463874
Alignment:
Q  335 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 424  Q
    |||||||||||| ||| || |||| |||||  || ||||| | ||| |||||||| |||| ||||||||||||||| |||||||| ||||    
T  21463785 caagaggattgagcacttgcccaataaagagtatggttccggacaaatcttctctgatcaaaaacaagaaagggtgatcagctacgaagt 21463874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 429
Target Start/End: Original strand, 20168618 - 20168721
Alignment:
Q  326 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 425  Q
    ||||| || |||||||||||| ||| || || ||||||| ||||||||| ||||| ||||| ||||| | ||| ||||| ||||||| | || ||||||     
T  20168618 atcactcatcaagaggattgagcacttgcccgacaaagaggattgttcccgtcaaatcttccctaattagaaataagaaggggtggttaacttcaaagtt 20168717  T
Q  426 tagt 429  Q
    ||||    
T  20168718 tagt 20168721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 429
Target Start/End: Complemental strand, 20359666 - 20359563
Alignment:
Q  326 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 425  Q
    ||||| || |||||||||||| ||| || || ||||||| ||||||||| ||||| ||||| ||||| | ||| ||||| ||||||| | || ||||||     
T  20359666 atcactcatcaagaggattgagcacttgcccgacaaagaggattgttcccgtcaaatcttccctaattagaaataagaaggggtggttaacttcaaagtt 20359567  T
Q  426 tagt 429  Q
    ||||    
T  20359566 tagt 20359563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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