View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1350_high_17 (Length: 453)
Name: NF1350_high_17
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 29390742 - 29390475
Alignment:
| Q |
10 |
aataacttcggcataaaaatatttttataaatctatttgtcgtaactacttcaatcatacattatcataaggtgcttataatgnnnnnnnnn-aatacaa |
108 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29390742 |
aataacttcggcatagaaatatttttataaatctatttgtcgtaactacttcaatcatacattatcataaggtgcttataatgttttttttttaatacaa |
29390643 |
T |
|
| Q |
109 |
gctacttgtttcaataacaagggaaataaagttgagtataataaaacaaaccgcatccaataaatattgtcaaatgtgtaacccggtacgagttgcaagt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29390642 |
gctacttgtttcaataacaagggaaataaacttgagtataataaaacaaaccgcatccaataaatattgtcaaatgtgtaacccggtacgagttgcaagt |
29390543 |
T |
|
| Q |
209 |
tnnnnnnnnnnnttgtgttttcgtaaacgagtaagaaatgatgagtaacttgtgtgttaattcggaca |
276 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29390542 |
taaaaaaaaaaattgtgttttcgtaaacgagtaagaaaggatgagtaacttgtgtgttaattcggaca |
29390475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 29390421 - 29390359
Alignment:
| Q |
297 |
ttgaataagggttgtgatttgtgaaatgaggtttaattctggaacaaaaagtgttattcattt |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29390421 |
ttgaataagggttgtgatttgtgaaatgaggtttacttctggaacaaaaagtgttattcattt |
29390359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University