View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350_high_20 (Length: 397)
Name: NF1350_high_20
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_high_20 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Original strand, 28288566 - 28288944
Alignment:
| Q |
19 |
tgtgggattgtagttatgggagtgggagcactggcaatatatgcattactttggaggaaaataaagagaagtaaaaagaaaatggaagaggctatgcatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28288566 |
tgtgggattgtagttatgggagtgggagcactggcaatatatgcattactttggaggaaaataaagagaagtaaaaagaaaaaggaagaggctatgcatt |
28288665 |
T |
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| Q |
119 |
taagaacaatgaatgatgaccttgaaagaggagcagggccaaggaggtttacctaccaagaacttgatttagctaccaataaatttaccgacgatagaaa |
218 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28288666 |
taagaacaatgaatgatgaccttcaaagaggagcagggccaaggaggtttacctaccaagaacttgatttggctaccaataaatttaccgacgatagaaa |
28288765 |
T |
|
| Q |
219 |
attaggtcaaggtggttttggagcagtttataaaggttacttttttgatcaagatttagccgttgctgtgaagaaaatatcaagagggtcaagacaaggg |
318 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28288766 |
attaggtcaaggtggttttggagctgtttataaaggttactttttcgatcaagatttagccgttgctgtgaagaaaatatcaagagggtcaagacaaggg |
28288865 |
T |
|
| Q |
319 |
aagaaagagtatgtaactgaagtgaaagttattagccagctgagacatcggaatcttgtgaagctcttaggttggtgcc |
397 |
Q |
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| T |
28288866 |
aagaaagagtatgtaactgaagttaaagttattagccagctgagacataggaatcttgtgaagctcttaggatggtgcc |
28288944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 27 - 397
Target Start/End: Complemental strand, 28305179 - 28304809
Alignment:
| Q |
27 |
tgtagttatgggagtgggagcactggcaatatatgcattactttggaggaaaataaagagaagtaaaaagaaaatggaagaggctatgcatttaagaaca |
126 |
Q |
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|||| |||| |||||||||||| ||| | ||||| | |||| |||||||| |||||||||| ||||| ||| |||||||||||||||||| | || |
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| T |
28305179 |
tgtaattataggagtgggagcattggtagcatatgtaatactaaagaggaaaagaaagagaagtgaaaagcaaaaggaagaggctatgcatttgacttca |
28305080 |
T |
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| Q |
127 |
atgaatgatgaccttgaaagaggagcagggccaaggaggtttacctaccaagaacttgatttagctaccaataaatttaccgacgatagaaaattaggtc |
226 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || || |||||||| ||| | | |||||||| || |||| |
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| T |
28305079 |
atgaatgatgaccttgaaagaggagcagggccaaggaggtttacctacaaagaacttgagttggcaaccaataacttttctaaggatagaaagttgggtc |
28304980 |
T |
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| Q |
227 |
aaggtggttttggagcagtttataaaggttacttttttgatcaagatttagccgttgctgtgaagaaaatatcaagagggtcaagacaagggaagaaaga |
326 |
Q |
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||||||||||||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
28304979 |
aaggtggttttggagcagtttttaaaggttactttgctgatttagatttacaagttgctgtgaagaaaatatccagagggtcaagacaaggaaagaaaga |
28304880 |
T |
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| Q |
327 |
gtatgtaactgaagtgaaagttattagccagctgagacatcggaatcttgtgaagctcttaggttggtgcc |
397 |
Q |
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| T |
28304879 |
gtatgtaactgaagttaaagttattagtcaactgagacataggaatcttgtgaagctcttaggctggtgcc |
28304809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 28294985 - 28294607
Alignment:
| Q |
19 |
tgtgggattgtagttatgggagtgggagcactggcaatatatgcattactttggaggaaaataaagagaagtaaaaagaaaatggaagaggctatgcatt |
118 |
Q |
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|||||| || ||||||| |||||||||||| | | | ||| |||||| |||||||||||| |||||||||||| ||| ||| ||||||||||||||||| |
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| T |
28294985 |
tgtggggttatagttataggagtgggagcattagtagcatacgcattattttggaggaaaagaaagagaagtaataagcaaaaggaagaggctatgcatt |
28294886 |
T |
|
| Q |
119 |
taagaacaatgaatgatgaccttgaaagaggagcagggccaaggaggtttacctaccaagaacttgatttagctaccaataaatttaccgacgatagaaa |
218 |
Q |
| |
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| | ||||||||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||| || |||||||| || | | |||||||| |
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| T |
28294885 |
tgacttcaatgaatgatgatcttgaaagaggagcagggccaagaaggttcacctacaaagaacttgatttggcaaccaataacttctctaaggatagaaa |
28294786 |
T |
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| Q |
219 |
attaggtcaaggtggttttggagcagtttataaaggttacttttttgatcaagatttagccgttgctgtgaagaaaatatcaagagggtcaagacaaggg |
318 |
Q |
| |
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|| |||||||||||||||||||| |||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
28294785 |
gttgggtcaaggtggttttggagctgtttataaaggttactttgctgatttagatttacaagttgctgtgaagaaaatatcaagaggatcaagacaagga |
28294686 |
T |
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| Q |
319 |
aagaaagagtatgtaactgaagtgaaagttattagccagctgagacatcggaatcttgtgaagctcttaggttggtgcc |
397 |
Q |
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| T |
28294685 |
aagaaagagtatgtaactgaagttaaagtcattagtcaactgagacataggaatcttgtgaagcttttgggttggtgcc |
28294607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 86 - 383
Target Start/End: Complemental strand, 28265103 - 28264806
Alignment:
| Q |
86 |
gaagtaaaaagaaaatggaagaggctatgcatttaagaacaatgaatgatgaccttgaaagaggagcagggccaaggaggtttacctaccaagaacttga |
185 |
Q |
| |
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||||| ||||| ||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28265103 |
gaagtgaaaagcaaaaggaagaggctatgcatttgacttcaatgaatgatgaccttgaaagaggagcagggccaaggaggtttacctacaaagaacttga |
28265004 |
T |
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| Q |
186 |
tttagctaccaataaatttaccgacgatagaaaattaggtcaaggtggttttggagcagtttataaaggttacttttttgatcaagatttagccgttgct |
285 |
Q |
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|| || |||||||| ||| | | |||||||| || ||||||||||||||||||||||||| ||||||||||||| |||| ||||||| |||||| |
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| T |
28265003 |
gttggcaaccaataacttttctaaggatagaaagttgggtcaaggtggttttggagcagtttttaaaggttactttgctgatttagatttacaagttgct |
28264904 |
T |
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| Q |
286 |
gtgaagaaaatatcaagagggtcaagacaagggaagaaagagtatgtaactgaagtgaaagttattagccagctgagacatcggaatcttgtgaagct |
383 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||| | |||||||||||||| |
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| T |
28264903 |
gtgaagaaaatatccagagggtcaagacaaggaaagaaagagtatgtaactgaagttaaagttattagtcaactgagacatagaaatcttgtgaagct |
28264806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 28278702 - 28279079
Alignment:
| Q |
20 |
gtgggattgtagttatgggagtgggagcactggcaatatatgcattactttggaggaaaataaagagaagtaaaaagaaaatggaagaggctatgcattt |
119 |
Q |
| |
|
||||| ||||||| |||||||||||||| | ||| |||||||||||||||||| || | ||||||||| ||||| ||| ||||||||||||| ||| |
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| T |
28278702 |
gtggggttgtagtagtgggagtgggagcaattgcagcatatgcattactttggagaaagacaaagagaagaaaaaaagaaaaggaagaggctatgagttt |
28278801 |
T |
|
| Q |
120 |
aagaacaatgaatgatgaccttgaaagaggagcagggccaaggaggtttacctaccaagaacttgatttagctaccaataaatttaccgacgatagaaaa |
219 |
Q |
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|| |||||||||| || ||||||||||||||||||||||||||||| |||||| |||||||| ||||||| || ||||| || | |||||||| |
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| T |
28278802 |
aacttcaatgaatgacgatcttgaaagaggagcagggccaaggaggttcacctacaaagaacttaatttagccactaataacttctctagggatagaaag |
28278901 |
T |
|
| Q |
220 |
ttaggtcaaggtggttttggagcagtttataaaggttacttttttgatcaagatttagccgttgctgtgaagaaaatatcaagagggtcaagacaaggga |
319 |
Q |
| |
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|| ||||||||||| |||||||| || ||||||||| |||||||||||| ||||||| | |||||||||||||||||||| | || || |||||||||| |
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| T |
28278902 |
ttgggtcaaggtgggtttggagctgtatataaaggtaacttttttgatccagatttaccggttgctgtgaagaaaatatcgaagggatctagacaaggga |
28279001 |
T |
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| Q |
320 |
agaaagagtatgtaactgaagtgaaagttattagccagctgagacatcggaatcttgtgaagctcttaggttggtgcc |
397 |
Q |
| |
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||||||||||||| |||||||| ||||| ||||||| ||||||| ||||||||||||||| | ||||||||||||| |
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| T |
28279002 |
agaaagagtatgttactgaagttaaagtcattagcccattgagacaccggaatcttgtgaagttgttaggttggtgcc |
28279079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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