View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350_high_26 (Length: 319)
Name: NF1350_high_26
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 6363499 - 6363250
Alignment:
| Q |
1 |
ctctttggtaataataccagcaccataaccaaagaacatttgcagccaaacatggttggggtcacggtagaacaggtaaatctttacccaattcaacaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6363499 |
ctctttggtaataataccagcaccataaccaaagaacatttgcagccaaacatggttggggtcacggtagaacaggtaaatctctacccaattcaacaac |
6363400 |
T |
|
| Q |
101 |
tttactctnnnnnnntaattcaacagtgctaaattttattttgtggaacaggctatccagaataataaattgttcatactggatcaccacgacccactct |
200 |
Q |
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| T |
6363399 |
tttactctaaaaaaataattcaacagtgctaaattttattttgtggaacaggctatccagaataataaattgttcatactggatcaccacgacccactct |
6363300 |
T |
|
| Q |
201 |
ttccatatttgaggaaaataaatgcaaccgagactaaggcctatgctact |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6363299 |
ttccatatttgaggaaaataaatgcaaccgagactaaggcctatgctact |
6363250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 128 - 249
Target Start/End: Complemental strand, 6352433 - 6352312
Alignment:
| Q |
128 |
gctaaattttattttgtggaacaggctatccagaataataaattgttcatactggatcaccacgacccactctttccatatttgaggaaaataaatgcaa |
227 |
Q |
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||||||||||||||||| |||||||||||| | |||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6352433 |
gctaaattttattttgtcatacaggctatccaagacaatagattgtacatacttgatcaccacgacccactctttccatatttgaggaaaataaatgcaa |
6352334 |
T |
|
| Q |
228 |
ccgagactaaggcctatgctac |
249 |
Q |
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||||||| |||||||||||||| |
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| T |
6352333 |
ccgagacaaaggcctatgctac |
6352312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 128 - 246
Target Start/End: Complemental strand, 7459268 - 7459150
Alignment:
| Q |
128 |
gctaaattttattttgtggaacaggctatccagaataataaattgttcatactggatcaccacgacccactctttccatatttgaggaaaataaatgcaa |
227 |
Q |
| |
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||||||||||||||||| |||||||||||| || |||||||||| |||||| ||||||||||| | ||| ||||||||||||||| ||||||||||| |
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| T |
7459268 |
gctaaattttattttgtcatacaggctatccaaaacaataaattgtacatacttgatcaccacgatctactaattccatatttgaggagaataaatgcaa |
7459169 |
T |
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| Q |
228 |
ccgagactaaggcctatgc |
246 |
Q |
| |
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| T |
7459168 |
ctgagacaaagtcctatgc |
7459150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 6352696 - 6352621
Alignment:
| Q |
4 |
tttggtaataataccagcaccataaccaaagaacatttgcagccaaacatggttggggtcacggtagaacaggtaa |
79 |
Q |
| |
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|||||| |||||||||||||||||||||||||| | ||| |||||||||||| ||||||||| ||||||||||||| |
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| T |
6352696 |
tttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggtggggtcaccgtagaacaggtaa |
6352621 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 247
Target Start/End: Complemental strand, 6424276 - 6424158
Alignment:
| Q |
129 |
ctaaattttattttgtggaacaggctatccagaataataaattgttcatactggatcaccacgacccactctttccatatttgaggaaaataaatgcaac |
228 |
Q |
| |
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||||||| |||||||| || |||||||||| || || ||||||| ||| || |||||| | ||| | | | ||||||||||||||||||||||||||| |
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| T |
6424276 |
ctaaattatattttgttgattaggctatccaaaacaacaaattgtacatccttgatcactatgacatagtatatccatatttgaggaaaataaatgcaac |
6424177 |
T |
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| Q |
229 |
cgagactaaggcctatgct |
247 |
Q |
| |
|
||||| |||||||||||| |
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| T |
6424176 |
tgagacaaaggcctatgct |
6424158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 6370395 - 6370317
Alignment:
| Q |
1 |
ctctttggtaataataccagcaccataaccaaagaacatttgcagccaaacatggttggggtcacggtagaacaggtaa |
79 |
Q |
| |
|
|||| |||| ||||||||||||| |||||||||||||| ||| ||||||||||| ||||||||| ||| || |||||| |
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| T |
6370395 |
ctctatggtgataataccagcacaataaccaaagaacacttggagccaaacatgaatggggtcacagtaaaagaggtaa |
6370317 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 6424409 - 6424341
Alignment:
| Q |
11 |
ataataccagcaccataaccaaagaacatttgcagccaaacatggttggggtcacggtagaacaggtaa |
79 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| |||||||| ||| ||| |||| ||||||||||||| |
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| T |
6424409 |
ataacaccagcaccataaccaaagaacaattggagccaaacttgggcgggatcactgtagaacaggtaa |
6424341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 6332033 - 6331959
Alignment:
| Q |
175 |
catactggatcaccacgacccactctttccatatttgaggaaaataaatgcaaccgagactaaggcctatgctac |
249 |
Q |
| |
|
|||||| |||||||| |||||| | ||||||||||||||||||||||| |||| || || ||||| |||||||| |
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| T |
6332033 |
catacttgatcaccatgacccaatatttccatatttgaggaaaataaactcaactgatacaaaggcatatgctac |
6331959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 6289345 - 6289284
Alignment:
| Q |
11 |
ataataccagcaccataaccaaagaacatttgcagccaaacatggttggggtcacggtagaa |
72 |
Q |
| |
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||||||| ||||| |||||||||||||| ||||||| ||| |||| ||||||||| |||||| |
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|
| T |
6289345 |
ataatacgagcacaataaccaaagaacagttgcagctaaatatggatggggtcactgtagaa |
6289284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 7459493 - 7459420
Alignment:
| Q |
6 |
tggtaataataccagcaccataaccaaagaacatttgcagccaaacatggttggggtcacggtagaacaggtaa |
79 |
Q |
| |
|
|||| ||||||||||||| ||||||| || || ||| |||||||||||| |||||||| ||||||||||||| |
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| T |
7459493 |
tggtgataataccagcacaataaccattgatcacttggagccaaacatgggaggggtcacagtagaacaggtaa |
7459420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 6370228 - 6370138
Alignment:
| Q |
134 |
ttttattttgtggaacaggctatccagaataataaattgttcatactggatcaccacgacccactctttccatatttgaggaaaataaatg |
224 |
Q |
| |
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|||| |||||| ||||||||||| | | |||| ||||| |||||| ||||||||||| || ||| |||||||||||||||| |||||| |
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|
| T |
6370228 |
tttttttttgtctaacaggctatcgaagacaatagattgtacatacttgatcaccacgatgcaatctatccatatttgaggaaagtaaatg |
6370138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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