View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350_high_29 (Length: 297)
Name: NF1350_high_29
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 24079548 - 24079804
Alignment:
| Q |
5 |
ttgcaagcgttgttcgttttcatcaactctccttgttagacaatcaaactttctcggcttagcattgaggtctccataccacaagttcgactcttcttga |
104 |
Q |
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| T |
24079548 |
ttgcaagcgttgttcgttttcatcaaccaaccttgttagagaatcaaactttctcggcttagcatagaggtctccataccacaagttcgactctt---ga |
24079644 |
T |
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| Q |
105 |
acagatttcaagagttgaagagcgatgtagtctttcatgatctttagaattgaatgcggtggttccatgtctctcaaaccaaaggtttcgttctttcttt |
204 |
Q |
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| T |
24079645 |
acagatttcaagagttgaagagcgttgtagtctttcatcatctttagaattgaatgtggtggttccatatctctcaaaccaaaggtttcg----ttcttt |
24079740 |
T |
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| Q |
205 |
ctttctttgcttgcgggtgttgtttgacacagacttgactgtgatgtatatttatagtaagagt |
268 |
Q |
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| T |
24079741 |
ctttctttgcttgcgagtgttgtttgccacagacttgactgtgatatatatttatagtgagagt |
24079804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 24079464 - 24079529
Alignment:
| Q |
5 |
ttgcaagcgttgttcgttttcatcaactctccttgttagacaatcaaactttctcggcttagcatt |
70 |
Q |
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| T |
24079464 |
ttgcaagagtttttcgttttcatcaaccaaccttgttagacaatcaaactctctcggcttagcatt |
24079529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 16437147 - 16437090
Alignment:
| Q |
151 |
gaattgaatgcggtggttccatgtctctcaaaccaaaggtttcgttctttctttcttt |
208 |
Q |
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| T |
16437147 |
gaattgaatgtggtggtttcatgtctctcaaagcaaaggtttctttctttctttcttt |
16437090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 16437350 - 16437279
Alignment:
| Q |
5 |
ttgcaagcgttgttcgttttcatcaactctccttgttagacaatcaaactttctcggcttagcattgaggtc |
76 |
Q |
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||||||| ||||||| ||||||||||| |||||||||||||||||||| | || ||||||||| |||||| |
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| T |
16437350 |
ttgcaagagttgttctttttcatcaaccgaccttgttagacaatcaaactctatcagcttagcatagaggtc |
16437279 |
T |
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