View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1350_high_31 (Length: 274)
Name: NF1350_high_31
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_high_31 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 266
Target Start/End: Complemental strand, 28289521 - 28289259
Alignment:
| Q |
4 |
acatcaggatgagcacaccacaatccaacaatcatcaaacactcaacttgtttctcaacaaaatcctttttcaagttctcatccattgccacaagtaact |
103 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| | ||||||||| ||| ||||||||||| | |||||||| || |
|
|
| T |
28289521 |
acatcaggatgagcacaccataatccaacaatcaacaaacactctacttgtttctcatcgaaatcctttcgcaaattctcatccatggtcacaagtagct |
28289422 |
T |
|
| Q |
104 |
ctcctcttccataatgatcccaaacccactcaatcaatcccttatctccatctttatccctcataacttcaacggctttccttccggttgtgatctccaa |
203 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |
|
|
| T |
28289421 |
ctcctcttccatgatgatcccaaacccactcaatcaatcccttatctccatctttatccctcataacttcaacagctttccgtccagttgtgatctccaa |
28289322 |
T |
|
| Q |
204 |
ggtaacaaccccaaaactgtacacatccgactctttgctagccttacctgtacttatatattc |
266 |
Q |
| |
|
|| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28289321 |
ggcaacaaccccaaaactatacacatctgactctttgctagccttacctgtacttatatattc |
28289259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 28279659 - 28279394
Alignment:
| Q |
1 |
ctaacatcaggatgagcacaccacaatccaacaatcatcaaacactcaacttgtttctcaacaaaatcctttttcaagttctcatccattgccacaagta |
100 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||| | ||||||||| ||| ||||||||||| | ||| |||| |
|
|
| T |
28279659 |
ctaacatcaggatgaacacaccataatccaacaatcaacaaacactctacttgtttctcatcgaaatcctttcgcaaattctcatccatggtcacgagta |
28279560 |
T |
|
| Q |
101 |
actctcctcttccataatgatcccaaacccactcaatcaatcccttatctccatctttatccctcataacttcaacggctttccttccggttgtgatctc |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28279559 |
tttcttctcttccataatgatcccaaacccactcaatcaatcccttatctccatctttgtcctccataacttcaacggctttccttccagttgtgatctc |
28279460 |
T |
|
| Q |
201 |
caaggtaacaaccccaaaactgtacacatccgactctttgctagccttacctgtacttatatattc |
266 |
Q |
| |
|
|||| ||||||||||| || || ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
28279459 |
caagacgacaaccccaaagctatagacatcagattctttgctagccttacctgtacttatatattc |
28279394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 266
Target Start/End: Original strand, 28264215 - 28264477
Alignment:
| Q |
4 |
acatcaggatgagcacaccacaatccaacaatcatcaaacactcaacttgtttctcaacaaaatcctttttcaagttctcatccattgccacaagtaact |
103 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| |||| |||| |||||||||||| |||||||||||| ||| ||||||||||| | |||||||| | |
|
|
| T |
28264215 |
acatccggatgagcacaccataatccaacaatcaacaaaaactctacttgtttctcatcaaaatccttttgcaaattctcatccatagtcacaagtagtt |
28264314 |
T |
|
| Q |
104 |
ctcctcttccataatgatcccaaacccactcaatcaatcccttatctccatctttatccctcataacttcaacggctttccttccggttgtgatctccaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||| || ||| ||| ||||||||| ||| |||||| |||| |||| ||| ||||| |
|
|
| T |
28264315 |
ctcctcttccataatgatcccaaacccagtcaattaatcccttatcttcaccttgttccttcataacttgaacagctttctttccagttgcgatttccaa |
28264414 |
T |
|
| Q |
204 |
ggtaacaaccccaaaactgtacacatccgactctttgctagccttacctgtacttatatattc |
266 |
Q |
| |
|
|| ||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28264415 |
ggcaacaaccccaaaactatacacatctgactctttgctagtcttacctgtacttatatattc |
28264477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 28304229 - 28304494
Alignment:
| Q |
1 |
ctaacatcaggatgagcacaccacaatccaacaatcatcaaacactcaacttgtttctcaacaaaatcctttttcaagttctcatccattgccacaagta |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| ||||||| || |||| |||||||||||||||||||||| |
|
|
| T |
28304229 |
ctaacatcaggatgagcacaccataatccaacaatcatcaagcactctacttgtttctcatcaaaatctttcctcaaattctcatccattgccacaagta |
28304328 |
T |
|
| Q |
101 |
actctcctcttccataatgatcccaaacccactcaatcaatcccttatctccatctttatccctcataacttcaacggctttccttccggttgtgatctc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||| ||| ||||||| ||| ||||||||||| ||||| |||||| || ||||| |
|
|
| T |
28304329 |
gctctccttttccataatgatcccaaacccactcaatcattcccttctcttcatctttctccttcataacttcagtagctttttttccggaggttatctc |
28304428 |
T |
|
| Q |
201 |
caaggtaacaaccccaaaactgtacacatccgactctttgctagccttacctgtacttatatattc |
266 |
Q |
| |
|
||| ||| | ||||||||| || ||||| |||||||| || ||| | |||||||| | |||||| |
|
|
| T |
28304429 |
taagacaactatcccaaaactataaacatctgactctttactcgcccttcctgtactcacatattc |
28304494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 28294027 - 28294280
Alignment:
| Q |
1 |
ctaacatcaggatgagcacaccacaatccaacaatcatcaaacactcaacttgtttctcaacaaaatcctttttcaagttctcatccattgccacaagta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||| |||| ||| || |||||||| || ||||||| |
|
|
| T |
28294027 |
ctaacatcaggatgagcacaccacaatccaacaatcatcaagcactctacttctttctcatcaaaatcattttgcaaattttcatccatggcgacaagta |
28294126 |
T |
|
| Q |
101 |
actctcctcttccataatgatcccaaacccactcaatcaatcccttatctccatctttatccctcataacttcaacggctttccttccggttgtgatctc |
200 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| ||||||| ||||| ||| ||| ||| | | |||| |||| | |||||| | || || || ||||| |
|
|
| T |
28294127 |
gctctccacttccataatgatcccaaatccattcaatcattccctgctcttcatttttttgcttcatcactttagtagctttcttaccagtagttatctc |
28294226 |
T |
|
| Q |
201 |
caaggtaacaaccccaaaactgtacacatccgactctttgctagccttacctgt |
254 |
Q |
| |
|
||| | ||| | ||||||||| |||||||| |||||||| || ||| ||||||| |
|
|
| T |
28294227 |
caaagcaactatcccaaaactatacacatctgactctttacttgccctacctgt |
28294280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University