View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350_high_4 (Length: 638)
Name: NF1350_high_4
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 24079608 - 24079131
Alignment:
| Q |
1 |
taagccgagagagtttgattgtctaacaaggttcgttgatgagaacgaacaacgcttgcaatctattcaacaagagttgaatgctaagccgagagagttt |
100 |
Q |
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|||||||||| ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24079608 |
taagccgagaaagtttgattctctaacaaggttggttgatgaaaacgaacaacgcttgcaatctattcaacaagagttgaatgctaagccgagagagttt |
24079509 |
T |
|
| Q |
101 |
gattgtctaacaaggttcgttgatgagaacgaacaacgcttgcaatctattcaacaagagttgaatgctaagccgagagagtttgattgtcaaagtcgaa |
200 |
Q |
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||||||||||||||||| |||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || |
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| T |
24079508 |
gattgtctaacaaggttggttgatgaaaacgaaaaactcttgcaatctattcaacaagagttgaatgctaagcacagagagtttgattgtctaagtcaaa |
24079409 |
T |
|
| Q |
201 |
cagggtcgatcaaagaaagaaactatgaggttgatgaaaaagagaaaaggcttcgagaaaaggccagcgatattgaaaatcaagagaaggatctcgagtc |
300 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24079408 |
tggggttgatcaaagagagaaactatgaggttgatgaaaaagagaaaaggcttcgagaaaaggccagtgatattgaaaatcaagagaaggatctcgagtc |
24079309 |
T |
|
| Q |
301 |
caaagagaaattttatcaagtacgagccaacctatgtaagtatttcatgtcaaatgacacttattcatctgaatcaactgtatgatgcaataataatacg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24079308 |
caaagagaaattttatcaagtacgagccaacctatgtaagtatttcatgtcaaatgacacttattcatctgaatcaactgtatgatgcaat---aatacg |
24079212 |
T |
|
| Q |
401 |
gaaaaagtgttgaaactaagcatcttgttagaacttaaacctgcattgattctaccacttccatgtattacattgttttgt |
481 |
Q |
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| T |
24079211 |
gaaaaagtgttgaaactaagcatcttgttagaacttaaacctgcattgattctaccacttccatgtattacattgttttgt |
24079131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 24079612 - 24079502
Alignment:
| Q |
81 |
atgctaagccgagagagtttgattgtctaacaaggttcgttgatgagaacgaacaacgcttgcaatctattcaacaagagttgaatgctaagccgagaga |
180 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24079612 |
atgctaagccgagaaagtttgattctctaacaaggttggttgatgaaaacgaacaacgcttgcaatctattcaacaagagttgaatgctaagccgagaga |
24079513 |
T |
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| Q |
181 |
gtttgattgtc |
191 |
Q |
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||||||||||| |
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| T |
24079512 |
gtttgattgtc |
24079502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 473 - 550
Target Start/End: Complemental strand, 24079116 - 24079038
Alignment:
| Q |
473 |
ttgttttgtattcataccttattctctcatta-tctttatattatatgatatctgattcagctattgcattatgatgat |
550 |
Q |
| |
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||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24079116 |
ttgttttgtattcatactttattctctcattaatctttatattatatgatatctgattcagctattgcattatgatgat |
24079038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 81 - 282
Target Start/End: Original strand, 16437286 - 16437481
Alignment:
| Q |
81 |
atgctaagccgagagagtttgattgtctaacaaggttcgttgatgagaacgaacaacgcttgcaatctattcaacaagagttgaatgctaagccgagaga |
180 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| |||||||| || ||||||| ||||||| || || |||| ||||||||||||||| |||||| |
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| T |
16437286 |
atgctaagctgatagagtttgattgtctaacaaggtcggttgatgaaaaagaacaactcttgcaaactgttgaacatgagttgaatgctaagaggagaga |
16437385 |
T |
|
| Q |
181 |
gtttgattgtcaaagtcgaacagggtcgatcaaagaaagaaactatgaggttgatgaaaaagagaaaaggcttcgagaaaaggccagcgatattgaaaat |
280 |
Q |
| |
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||||||| | || |||||| ||||||||||||||||||||| | ||||||||| || ||||||||||||||||||||||| ||||| |||||| |
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| T |
16437386 |
gtttgat------attcttgcagggttgatcaaagaaagaaactatgacgctgatgaaaaggaaaaaaggcttcgagaaaaggccagggatatcgaaaat |
16437479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 16437290 - 16437392
Alignment:
| Q |
1 |
taagccgagagagtttgattgtctaacaaggttcgttgatgagaacgaacaacgcttgcaatctattcaacaagagttgaatgctaagccgagagagttt |
100 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||||||| || ||||||| ||||||| || || |||| ||||||||||||||| |||||||||| |
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| T |
16437290 |
taagctgatagagtttgattgtctaacaaggtcggttgatgaaaaagaacaactcttgcaaactgttgaacatgagttgaatgctaagaggagagagttt |
16437389 |
T |
|
| Q |
101 |
gat |
103 |
Q |
| |
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||| |
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|
| T |
16437390 |
gat |
16437392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 51518910 - 51518977
Alignment:
| Q |
234 |
atgaaaaagagaaaaggcttcgagaaaaggccagcgatattgaaaatcaagagaaggatctcgagtcca |
302 |
Q |
| |
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|||||||||||||| |||| |||||||||||| ||||||||| |||||| ||||||||||||||||| |
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|
| T |
51518910 |
atgaaaaagagaaa-ggctcggagaaaaggccaaggatattgaagatcaagtgaaggatctcgagtcca |
51518977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 7893672 - 7893714
Alignment:
| Q |
351 |
caaatgacacttattcatctgaatcaactgtatgatgcaataa |
393 |
Q |
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|||||| ||||||||||| | |||||||||||||||||||||| |
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| T |
7893672 |
caaatgccacttattcatgtcaatcaactgtatgatgcaataa |
7893714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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