View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350_low_11 (Length: 524)
Name: NF1350_low_11
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 29 - 434
Target Start/End: Complemental strand, 25575083 - 25574678
Alignment:
| Q |
29 |
caacaatatctgtattgtgattccatttctcccatccatcaaaaccttctttcctttctctttcgcccaatctgtcaaaaatcctcttaccttgcaactc |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25575083 |
caacaatatctgtattgtgattccatttctcccatccatcaaaaccttctttcctttctctttcgcccaatttgtcaaaaatcctcttaccttgcaactc |
25574984 |
T |
|
| Q |
129 |
ataggtatttccttttctttcaccacccctatcaaattttgcaaaatgtgactccggttgttgtttggaccacatcaaagtcaacagttccccacatatc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25574983 |
ataggtatttccttttctttcaccacccctatcaaattttgcaaaatgtgactccggttgttgtttggaccacatcaaagtcaacagttccccacatatc |
25574884 |
T |
|
| Q |
229 |
tttctacctttcaattctctcaaagctttctccgcatccgaacggaaatcaaacaccacaaaaccataaccttcttttttcacctgaacattacaatgcc |
328 |
Q |
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||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25574883 |
tttgtacctttcaattccctcaaagctttctccgcatccaaacggaaatcaaacaccacaaaaccataaccttcttttttcacctgaacattacaacgcc |
25574784 |
T |
|
| Q |
329 |
caaatctaccaaaaactcgctcaagttcatctctacaaacacgttccgatagtttaccgaaatacaacgacatctacaataataaacaaacacatttaat |
428 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25574783 |
caaatctaccaaaaactcgctcaagttcatctctacaaacacgttccgatagtttaccgaaatacaacgacatctacaataataaacaaacacatttaat |
25574684 |
T |
|
| Q |
429 |
agtaag |
434 |
Q |
| |
|
|||||| |
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| T |
25574683 |
agtaag |
25574678 |
T |
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