View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1350_low_12 (Length: 521)
Name: NF1350_low_12
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 9 - 492
Target Start/End: Original strand, 28288835 - 28289318
Alignment:
| Q |
9 |
gaagaatatatcaagagggtcaagacaagggaagaaagagtatgtaactgaagtgaaagttattagccagctgagacatcggaatcttgtgaagctctta |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28288835 |
gaagaaaatatcaagagggtcaagacaagggaagaaagagtatgtaactgaagttaaagttattagccagctgagacataggaatcttgtgaagctctta |
28288934 |
T |
|
| Q |
109 |
ggttggtgccatgagaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttattcggaaaaaggacacctctttctt |
208 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28288935 |
ggatggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttattcggaaaaaggacacctctttctt |
28289034 |
T |
|
| Q |
209 |
ggagtgtaagacataaaatagctcttggattggcttttggggtactttatctacatgaagaatgggagaggtgtgtggttcatagagatatcaaatcaag |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28289035 |
ggagtgtaagacataaaatagctcttggattggcttttggggtactttatctacatgaagaatgggagaggtgtgtggttcatagagatatcaaatcaag |
28289134 |
T |
|
| Q |
309 |
taatgttatgcttgattctagtttcaatgttaagcttggtgactttgggttggctaaactaatggaccatgagattggaccccaaacaacagtggttgcc |
408 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28289135 |
taatgttatgctagattctagtttcaatgttaagcttggtgactttgggttggctaaactaatggatcatgagattggaccccaaacaacagtggttgcc |
28289234 |
T |
|
| Q |
409 |
ggaaccttaggctatttggctcccgaatatataagtacaggtaaggctagcaaagagtcggatgtgtacagttttggggttgtt |
492 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
28289235 |
ggaaccttaggctatttggctccagaatatataagtacaggtaaggctagcaaagagtcagatgtgtatagttttggggttgtt |
28289318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 9 - 492
Target Start/End: Complemental strand, 28264901 - 28264418
Alignment:
| Q |
9 |
gaagaatatatcaagagggtcaagacaagggaagaaagagtatgtaactgaagtgaaagttattagccagctgagacatcggaatcttgtgaagctctta |
108 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||| | |||||||||||||| | |
|
|
| T |
28264901 |
gaagaaaatatccagagggtcaagacaaggaaagaaagagtatgtaactgaagttaaagttattagtcaactgagacatagaaatcttgtgaagcttctg |
28264802 |
T |
|
| Q |
109 |
ggttggtgccatgagaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttattcggaaaaaggacacctctttctt |
208 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
28264801 |
ggatggtgccatgataaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttcctt |
28264702 |
T |
|
| Q |
209 |
ggagtgtaagacataaaatagctcttggattggcttttggggtactttatctacatgaagaatgggagaggtgtgtggttcatagagatatcaaatcaag |
308 |
Q |
| |
|
||| |||||| || |||||||| ||||| ||||| | ||| || ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
28264701 |
ggattgtaaggcacaaaatagcacttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatattaaatcaag |
28264602 |
T |
|
| Q |
309 |
taatgttatgcttgattctagtttcaatgttaagcttggtgactttgggttggctaaactaatggaccatgagattggaccccaaacaacagtggttgcc |
408 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28264601 |
taatgttatgctagattctagtttcaatgttaagcttggtgactttgggttggctaagctaatggaccatgagattggaccccaaacaacagtggttgcc |
28264502 |
T |
|
| Q |
409 |
ggaaccttaggctatttggctcccgaatatataagtacaggtaaggctagcaaagagtcggatgtgtacagttttggggttgtt |
492 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
28264501 |
ggaaccttaggctatatggctccggaatatataagtacaggtaagactagcaaagagtcagatgtgtatagttttggggttgtt |
28264418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 9 - 486
Target Start/End: Complemental strand, 28294716 - 28294239
Alignment:
| Q |
9 |
gaagaatatatcaagagggtcaagacaagggaagaaagagtatgtaactgaagtgaaagttattagccagctgagacatcggaatcttgtgaagctctta |
108 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||||| |||||||||||||||| || |
|
|
| T |
28294716 |
gaagaaaatatcaagaggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacataggaatcttgtgaagcttttg |
28294617 |
T |
|
| Q |
109 |
ggttggtgccatgagaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttattcggaaaaaggacacctctttctt |
208 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
28294616 |
ggttggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttctt |
28294517 |
T |
|
| Q |
209 |
ggagtgtaagacataaaatagctcttggattggcttttggggtactttatctacatgaagaatgggagaggtgtgtggttcatagagatatcaaatcaag |
308 |
Q |
| |
|
|| ||||||| || |||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
28294516 |
ggggtgtaaggcacaaaatagctcttggattggcttctggtttgctttatctacatgaagaatgggagaggtgtgtggttcatagggatattaaatcaag |
28294417 |
T |
|
| Q |
309 |
taatgttatgcttgattctagtttcaatgttaagcttggtgactttgggttggctaaactaatggaccatgagattggaccccaaacaacagtggttgcc |
408 |
Q |
| |
|
|||||||||| | || || ||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |||| || |||||||| | | | ||| |
|
|
| T |
28294416 |
taatgttatgttagactcaagtttcaatgtcaagcttggtgattttgggttggctaagttaatggaccatgaacttgggccgcaaacaactgggctggcc |
28294317 |
T |
|
| Q |
409 |
ggaaccttaggctatttggctcccgaatatataagtacaggtaaggctagcaaagagtcggatgtgtacagttttggg |
486 |
Q |
| |
|
||||| || |||||| | ||||| |||||| | || ||||||| ||| || |||||||| |||||||| ||||||||| |
|
|
| T |
28294316 |
ggaacatttggctatctagctccggaatatgtgagcacaggtagggcaagtaaagagtcagatgtgtatagttttggg |
28294239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 486
Target Start/End: Complemental strand, 28304918 - 28304441
Alignment:
| Q |
9 |
gaagaatatatcaagagggtcaagacaagggaagaaagagtatgtaactgaagtgaaagttattagccagctgagacatcggaatcttgtgaagctctta |
108 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||| |||||||||||||||||||| |
|
|
| T |
28304918 |
gaagaaaatatccagagggtcaagacaaggaaagaaagagtatgtaactgaagttaaagttattagtcaactgagacataggaatcttgtgaagctctta |
28304819 |
T |
|
| Q |
109 |
ggttggtgccatgagaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttattcggaaaaaggacacctctttctt |
208 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
28304818 |
ggctggtgccatgacaaaggtgagtttctacttatttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttctt |
28304719 |
T |
|
| Q |
209 |
ggagtgtaagacataaaatagctcttggattggcttttggggtactttatctacatgaagaatgggagaggtgtgtggttcatagagatatcaaatcaag |
308 |
Q |
| |
|
|| ||||||| || |||||| ||||||||||||| | ||| | || |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
28304718 |
ggggtgtaaggcacaaaataactcttggattggcctctggtttgctgtatctacatgaagaatgggagaggtgtgtggtacatagggatattaaatcaag |
28304619 |
T |
|
| Q |
309 |
taatgttatgcttgattctagtttcaatgttaagcttggtgactttgggttggctaaactaatggaccatgagattggaccccaaacaacagtggttgcc |
408 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| |||| || ||||| || | | | ||| |
|
|
| T |
28304618 |
taatgttatgctagattcaagttttaatgttaagcttggtgattttgggttggctaaattaatggaccatgaacttgggcctcaaacgacggggctggcc |
28304519 |
T |
|
| Q |
409 |
ggaaccttaggctatttggctcccgaatatataagtacaggtaaggctagcaaagagtcggatgtgtacagttttggg |
486 |
Q |
| |
|
||||| || |||||| | ||||| |||||| | |||||||| | ||| || |||||||| ||||| || ||||||||| |
|
|
| T |
28304518 |
ggaacattcggctatctagctccagaatatgtgagtacaggaagggcgagtaaagagtcagatgtttatagttttggg |
28304441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 31 - 491
Target Start/End: Original strand, 28278992 - 28279452
Alignment:
| Q |
31 |
agacaagggaagaaagagtatgtaactgaagtgaaagttattagccagctgagacatcggaatcttgtgaagctcttaggttggtgccatgagaaaggtg |
130 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||| ||||||||||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
28278992 |
agacaagggaagaaagagtatgttactgaagttaaagtcattagcccattgagacaccggaatcttgtgaagttgttaggttggtgccatgaaaaaggtg |
28279091 |
T |
|
| Q |
131 |
agtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttattcggaaaaaggacacctctttcttggagtgtaagacataaaatagc |
230 |
Q |
| |
|
||||||| |||||||||||||| ||||| || ||||| || |||||||||||||| || ||||| | |||||||||||||||| |||| || |||||||| |
|
|
| T |
28279092 |
agtttcttcttgtttatgagtttatgcctaacggtagcctggattctcatttatttggtaaaagaatacctctttcttggagtctaaggcacaaaatagc |
28279191 |
T |
|
| Q |
231 |
tcttggattggcttttggggtactttatctacatgaagaatgggagaggtgtgtggttcatagagatatcaaatcaagtaatgttatgcttgattctagt |
330 |
Q |
| |
|
|||| |||||| | ||| || |||||| |||||||||||||||| | |||||||| ||||| ||||| |||||||||||||||||| | ||||||||| |
|
|
| T |
28279192 |
acttgaattggcatctggtgtgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaagtaatgttatgttagattctagt |
28279291 |
T |
|
| Q |
331 |
ttcaatgttaagcttggtgactttgggttggctaaactaatggaccatgagattggaccccaaacaacagtggttgccggaaccttaggctatttggctc |
430 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| |||| ||||||||| |||| || |||||||||||| |||| ||||||||||| |||||||||| |
|
|
| T |
28279292 |
ttcaatgtcaagcttggtgattttgggttggctaaattaatagaccatgagcttgggcctcaaacaacagtgattgctggaaccttaggatatttggctc |
28279391 |
T |
|
| Q |
431 |
ccgaatatataagtacaggtaaggctagcaaagagtcggatgtgtacagttttggggttgt |
491 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| || ||||| || || ||||||||||| |
|
|
| T |
28279392 |
cagaatatataagtacaggtaaggctagcaaagaatctgatgtctatagctttggggttgt |
28279452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 28342119 - 28342037
Alignment:
| Q |
103 |
ctcttaggttggtgccatgagaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatt |
185 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||| || ||||||||||||| | |||||| ||||| |||||||||| |||| |||| |
|
|
| T |
28342119 |
ctcttaggttggtgtcatgaaaaaagtgagcttttacttgtttatgaatacatgcctaatggaagtcttgattatcatctatt |
28342037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 43363692 - 43363761
Alignment:
| Q |
287 |
ttcatagagatatcaaatcaagtaatgttatgcttgattctagtttcaatgttaagcttggtgactttgg |
356 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| | |||| | |||||||| |||||||||||||||||| |
|
|
| T |
43363692 |
ttcatagggatataaaatcaagtaatgttatgttgtattcaaatttcaatgctaagcttggtgactttgg |
43363761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 17124362 - 17124402
Alignment:
| Q |
287 |
ttcatagagatatcaaatcaagtaatgttatgcttgattct |
327 |
Q |
| |
|
||||||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
17124362 |
ttcatagagatgttaaaacaagtaatgttatgcttgattct |
17124402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 364
Target Start/End: Original strand, 47871591 - 47871699
Alignment:
| Q |
256 |
tatctacatgaagaatgggagaggtgtgtggttcatagagatatcaaatcaagtaatgttatgcttgattctagtttcaatgttaagcttggtgactttg |
355 |
Q |
| |
|
||||| |||||||||||||| |||||| |||||||||| || ||||| || || ||||| | || ||||||||||| ||||||||||| |||| |
|
|
| T |
47871591 |
tatcttcatgaagaatgggaacaatgtgtgattcatagagacataaaatccagcaacattatgttggacgatagtttcaatgcaaagcttggtgattttg |
47871690 |
T |
|
| Q |
356 |
ggttggcta |
364 |
Q |
| |
|
||||||||| |
|
|
| T |
47871691 |
ggttggcta |
47871699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 1225101 - 1225145
Alignment:
| Q |
120 |
tgagaaaggtgagtttctacttgtttatgagttcatgccaaatgg |
164 |
Q |
| |
|
||||||||||||||| || ||||||||||| |||||||| ||||| |
|
|
| T |
1225101 |
tgagaaaggtgagttgcttcttgtttatgatttcatgcctaatgg |
1225145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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