View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1350_low_15 (Length: 499)

Name: NF1350_low_15
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1350_low_15
NF1350_low_15
[»] chr3 (22 HSPs)
chr3 (204-488)||(46491073-46491357)
chr3 (30-187)||(46491384-46491541)
chr3 (323-438)||(46480210-46480325)
chr3 (320-439)||(51944306-51944425)
chr3 (332-423)||(46498380-46498471)
chr3 (328-432)||(46506843-46506952)
chr3 (334-431)||(47413797-47413894)
chr3 (319-439)||(5160693-5160813)
chr3 (335-426)||(46553795-46553886)
chr3 (319-437)||(46474341-46474459)
chr3 (334-426)||(46532342-46532434)
chr3 (319-426)||(5156674-5156781)
chr3 (335-426)||(46544913-46545004)
chr3 (319-421)||(46484474-46484576)
chr3 (325-425)||(46236382-46236482)
chr3 (369-424)||(46539443-46539498)
chr3 (351-423)||(46526031-46526103)
chr3 (325-426)||(46535370-46535471)
chr3 (124-184)||(46498700-46498760)
chr3 (357-432)||(16025901-16025976)
chr3 (325-423)||(46548602-46548700)
chr3 (369-426)||(4581015-4581072)
[»] chr4 (2 HSPs)
chr4 (328-432)||(15556432-15556536)
chr4 (335-429)||(35155835-35155929)
[»] chr7 (7 HSPs)
chr7 (322-424)||(17736950-17737052)
chr7 (324-424)||(17718537-17718637)
chr7 (334-424)||(17699604-17699694)
chr7 (324-424)||(17708713-17708813)
chr7 (324-424)||(17736367-17736467)
chr7 (334-424)||(16722590-16722680)
chr7 (324-415)||(16730588-16730679)
[»] chr8 (3 HSPs)
chr8 (325-436)||(9675300-9675411)
chr8 (325-436)||(9692322-9692433)
chr8 (334-423)||(21463785-21463874)
[»] chr2 (2 HSPs)
chr2 (325-428)||(20168618-20168721)
chr2 (325-428)||(20359563-20359666)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 204 - 488
Target Start/End: Complemental strand, 46491357 - 46491073
Alignment:
Q  204 tctatgaggaaacatatggaaaggcaggtaaatcatctacctacattctcattttactaacatcatattgtcaggaaaaataaattccctatttatctat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46491357 tctatgaggaaacatatggaaaggcaggtaaatcatctacctacattctcattttactaacatcatattgtcaggaaaaataaattccctatttatctat 46491258  T
Q  304 tggcgagtgtggcacgctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaa 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46491257 tggcgagtgtggcacgctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaa 46491158  T
Q  404 agggtggtcagctacaaagtctagtcgagttggaaaacccatgccactgctagtcattacttcagttacggtggctgcaacagct 488  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||    
T  46491157 agggtggccagccacaaagtctagtcgagttggaaaacccatgccactgctagtgaatacttcagttgcggtggctgcaacagct 46491073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 46491541 - 46491384
Alignment:
Q  30 cgtgtgcccaaccagatttaatgtttaccactatattccttctgattctatatatatccttccaattaccttggcaggtgttagatatcatgagttgtta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46491541 cgtgtgcccaaccagatttaatgtttaccactatattccttctgattctatatatatccttccaattaccttggcaggtgttagatatcatgagttgtta 46491442  T
Q  130 aagaaattaaaggaagtctaccaaaatttattaaaatacacaagtatgaactcttcgg 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46491441 aagaaattaaaggaagtctaccaaaatttattaaaatacacaagtatgaactcatcgg 46491384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 323 - 438
Target Start/End: Complemental strand, 46480325 - 46480210
Alignment:
Q  323 aaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaag 422  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  46480325 aaatcacccagcaagaggattgagcacctgtccaacaaagatgattgttccggtcaagtcttctctaatcataaataagaaagggtggtcagctacaaag 46480226  T
Q  423 tctagtcgagttggaa 438  Q
    ||||| |||| |||||    
T  46480225 tctagccgaggtggaa 46480210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 320 - 439
Target Start/End: Complemental strand, 51944425 - 51944306
Alignment:
Q  320 ctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctaca 419  Q
    |||| ||||||| | ||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  51944425 ctaagatcacccggtaagtgggttgagcacctgtccaacaaagatgattgttccagtcaaatcttctctaatcagaaataagaaagggtggtcagctaca 51944326  T
Q  420 aagtctagtcgagttggaaa 439  Q
    ||||||||| ||| ||||||    
T  51944325 aagtctagttgagatggaaa 51944306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 423
Target Start/End: Complemental strand, 46498471 - 46498380
Alignment:
Q  332 agcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 423  Q
    |||||||||||||| |||||| |||||||||| ||| ||||| ||||| |||||||| || ||||| ||||| |||||||||||||||||||    
T  46498471 agcaagaggattgagcacctgcccaacaaagacgatagttccggtcaaatcttctctgataataaataagaatgggtggtcagctacaaagt 46498380  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 432
Target Start/End: Original strand, 46506843 - 46506952
Alignment:
Q  328 acccagcaagaggattgaacacctgtccaacaaa-----gatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaag 422  Q
    |||||||||||||||||| |||||||||||||||     || ||||||||| ||| | |||||| |||| | ||| ||||| ||||||||||||||||||    
T  46506843 acccagcaagaggattgagcacctgtccaacaaattaaagaggattgttccggtccaatcttctttaattagaaataagaatgggtggtcagctacaaag 46506942  T
Q  423 tctagtcgag 432  Q
    ||||||||||    
T  46506943 tctagtcgag 46506952  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 431
Target Start/End: Original strand, 47413797 - 47413894
Alignment:
Q  334 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctagtcga 431  Q
    |||||||||||| ||| ||||||||||||| ||||||| | ||  | ||||||||||| | ||| |||||||||||||| ||||||||||||||||||    
T  47413797 caagaggattgagcacatgtccaacaaagaggattgtttcggttgaatcttctctaattagaaataagaaagggtggtcggctacaaagtctagtcga 47413894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 319 - 439
Target Start/End: Complemental strand, 5160813 - 5160693
Alignment:
Q  319 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 418  Q
    ||||| ||||| || ||||||||||||  || |||||||||||||  || ||||||||| | ||||||||||||| ||| ||||||||||||||||||||    
T  5160813 gctaagatcactcatcaagaggattgagtacttgtccaacaaagagaatggttccagtccaatcttctctaatcagaaataagaaagggtggtcagctac 5160714  T
Q  419 aaagtctagtcgagttggaaa 439  Q
     || || ||  ||||||||||    
T  5160713 gaaatcaagctgagttggaaa 5160693  T

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Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 426
Target Start/End: Original strand, 46553795 - 46553886
Alignment:
Q  335 aagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 426  Q
    |||||||||||  || || ||||||||||  ||||| |||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  46553795 aagaggattgagaacttggccaacaaagagtattgtaccagacaaatcttctctaataaaaaacaagaaagggtggtcagctacaaagtcta 46553886  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 437
Target Start/End: Complemental strand, 46474459 - 46474341
Alignment:
Q  319 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 418  Q
    ||||| |||||||| |||||||||| | ||||||||||||||||||||||||||| | ||| || |||||||| | | | ||||| ||||| ||| ||||    
T  46474459 gctaagatcacccatcaagaggattaagcacctgtccaacaaagatgattgttccggccaaatcatctctaattagatataagaatgggtgatcaactac 46474360  T
Q  419 aaagtctagtcgagttgga 437  Q
    ||| || | ||||||||||    
T  46474359 aaaatccattcgagttgga 46474341  T

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Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 46532434 - 46532342
Alignment:
Q  334 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 426  Q
    |||||||||||| ||| || ||||||||||  ||||| |||| ||| || ||||| |||| ||||| ||||||||||||||||||||||||||    
T  46532434 caagaggattgagcacttggccaacaaagagtattgtaccagacaaatcgtctcttatcaaaaacatgaaagggtggtcagctacaaagtcta 46532342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 319 - 426
Target Start/End: Complemental strand, 5156781 - 5156674
Alignment:
Q  319 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 418  Q
    ||||| ||||| || |||| ||||||| ||| |||||||||||||  || ||||||||| | | ||||||||| | ||| ||||||||||| ||||||||    
T  5156781 gctaagatcactcatcaagtggattgagcacttgtccaacaaagagaatggttccagtcgagttttctctaattagaaataagaaagggtgatcagctac 5156682  T
Q  419 aaagtcta 426  Q
    ||||||||    
T  5156681 aaagtcta 5156674  T

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Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 335 - 426
Target Start/End: Complemental strand, 46545004 - 46544913
Alignment:
Q  335 aagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 426  Q
    |||||||||||  || ||||||| |||||  |  ||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||    
T  46545004 aagaggattgagaacttgtccaataaagagtaccgttccagacaaatcttctctgatcaaaaacaagaaagggtggtcagctacaaagtcta 46544913  T

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Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 421
Target Start/End: Complemental strand, 46484576 - 46484474
Alignment:
Q  319 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 418  Q
    ||||| |||||||| ||||| |||| | ||| ||||||||||||||||||||||||| ||| || |||||||| | | | ||||| ||||| ||||||||    
T  46484576 gctaagatcacccatcaagatgattaagcacatgtccaacaaagatgattgttccagccaaatcatctctaattagatataagaatgggtgatcagctac 46484477  T
Q  419 aaa 421  Q
    |||    
T  46484476 aaa 46484474  T

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Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 425
Target Start/End: Original strand, 46236382 - 46236482
Alignment:
Q  325 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 424  Q
    |||| ||| ||| |||||||| |||||||||| |||||| ||||||||| ||| |  |||||||||| | ||| | ||||||||| ||||||||||||||    
T  46236382 atcatccaacaacaggattgagcacctgtccagcaaagaggattgttccggtcgaaacttctctaattagaaataggaaagggtgatcagctacaaagtc 46236481  T
Q  425 t 425  Q
    |    
T  46236482 t 46236482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 46539498 - 46539443
Alignment:
Q  369 gttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 424  Q
    ||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||    
T  46539498 gttccagacaaatcttctctgatcaaaaacaagaaagggtggtcagctacaaagtc 46539443  T

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Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 423
Target Start/End: Original strand, 46526031 - 46526103
Alignment:
Q  351 tgtccaacaaagatgatt-gttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 423  Q
    ||||||||||||| |||| ||||||||||| ||||||||||| | |||||||||| ||||||| ||||||||||    
T  46526031 tgtccaacaaagaggatttgttccagtcaaatcttctctaattagaaacaagaaa-ggtggtctgctacaaagt 46526103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 426
Target Start/End: Complemental strand, 46535471 - 46535370
Alignment:
Q  325 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 424  Q
    |||| ||||||||||||||   ||| || |||||||||   ||||| ||||  || |||||||| |||| |||||||||||| |||||||||||||||||    
T  46535471 atcatccagcaagaggattatgcacttgcccaacaaagtgtattgtaccagataaatcttctcttatcaaaaacaagaaaggatggtcagctacaaagtc 46535372  T
Q  425 ta 426  Q
    ||    
T  46535371 ta 46535370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 46498760 - 46498700
Alignment:
Q  124 ttgttaaagaaattaaaggaagtctaccaaaatttattaaaatacacaagtatgaactctt 184  Q
    ||||||||||||||| |||||||||  ||||| ||||||| |||||||| |||||||||||    
T  46498760 ttgttaaagaaattagaggaagtctgtcaaaaattattaacatacacaattatgaactctt 46498700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 432
Target Start/End: Complemental strand, 16025976 - 16025901
Alignment:
Q  357 acaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctagtcgag 432  Q
    ||||||| ||||||| | || || ||||||||||| | ||| ||||||||||||||||||||||| |||| |||||    
T  16025976 acaaagaggattgtttcggttaaatcttctctaattagaaataagaaagggtggtcagctacaaaatctactcgag 16025901  T

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Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 423
Target Start/End: Original strand, 46548602 - 46548700
Alignment:
Q  325 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 423  Q
    |||||||| ||| |||||||| ||| ||||||| |||||  || |||||||   | |||||| | |||||||||| |||||| ||||||||||||||||    
T  46548602 atcacccaacaaaaggattgagcacttgtccaataaagagtatagttccagaagaatcttctttgatcataaacatgaaaggatggtcagctacaaagt 46548700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 426
Target Start/End: Original strand, 4581015 - 4581072
Alignment:
Q  369 gttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 426  Q
    ||||||| ||| |||||||  |||| ||||||||||||||||||||| ||||| ||||    
T  4581015 gttccagacaaatcttctcggatcaaaaacaagaaagggtggtcagccacaaattcta 4581072  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 328 - 432
Target Start/End: Complemental strand, 15556536 - 15556432
Alignment:
Q  328 acccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctag 427  Q
    ||||||||| |||||| | ||||||||||||||||| |||||| || ||||| |||||||| || | ||| ||||| |||||||||||||||||||||||    
T  15556536 acccagcaaaaggattaagcacctgtccaacaaagaggattgtgccggtcaaatcttctcttattagaaataagaatgggtggtcagctacaaagtctag 15556437  T
Q  428 tcgag 432  Q
    |||||    
T  15556436 tcgag 15556432  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 429
Target Start/End: Complemental strand, 35155929 - 35155835
Alignment:
Q  335 aagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctagtc 429  Q
    |||||| |||||||| |||||  |||||| |||||||   ||||| ||||||||||| | ||| ||||||||||| ||||||| |||||||||||    
T  35155929 aagagggttgaacacttgtccggcaaagaggattgtttgggtcaaatcttctctaattaaaaataagaaagggtgatcagctataaagtctagtc 35155835  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 424
Target Start/End: Complemental strand, 17737052 - 17736950
Alignment:
Q  322 aaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaa 421  Q
    ||||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || ||||||||||||||||||||    
T  17737052 aaaatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaa 17736953  T
Q  422 gtc 424  Q
    |||    
T  17736952 gtc 17736950  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 17718637 - 17718537
Alignment:
Q  324 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 423  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || ||||||||||||||||||||||    
T  17718637 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagt 17718538  T
Q  424 c 424  Q
    |    
T  17718537 c 17718537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 424
Target Start/End: Complemental strand, 17699694 - 17699604
Alignment:
Q  334 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 424  Q
    |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||||||||||||    
T  17699694 caagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagtc 17699604  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 17708813 - 17708713
Alignment:
Q  324 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 423  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||| |||||||    
T  17708813 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagt 17708714  T
Q  424 c 424  Q
    |    
T  17708713 c 17708713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 17736467 - 17736367
Alignment:
Q  324 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 423  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||| |||||||    
T  17736467 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagt 17736368  T
Q  424 c 424  Q
    |    
T  17736367 c 17736367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 334 - 424
Target Start/End: Complemental strand, 16722680 - 16722590
Alignment:
Q  334 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 424  Q
    |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||| ||||||||    
T  16722680 caagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagtc 16722590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 324 - 415
Target Start/End: Complemental strand, 16730679 - 16730588
Alignment:
Q  324 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagc 415  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || ||||||||||||||    
T  16730679 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagc 16730588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 436
Target Start/End: Original strand, 9675300 - 9675411
Alignment:
Q  325 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 424  Q
    |||||||| ||||||||||||  ||||||||  ||||||||||||||   ||| | ||||||||||| | ||| | ||||||||| || |||| ||||||    
T  9675300 atcacccaacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaataggaaagggtgatcggctataaagtc 9675399  T
Q  425 tagtcgagttgg 436  Q
    || || ||||||    
T  9675400 tattccagttgg 9675411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 436
Target Start/End: Original strand, 9692322 - 9692433
Alignment:
Q  325 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 424  Q
    |||||||| ||||||||||||  ||||||||  |||||||||| |||   ||||| ||||||||||| | ||| | ||||||||| || |||| ||||||    
T  9692322 atcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcaaatcttctctaattagaaataggaaagggtgatcggctataaagtc 9692421  T
Q  425 tagtcgagttgg 436  Q
    || || ||||||    
T  9692422 tattccagttgg 9692433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 334 - 423
Target Start/End: Original strand, 21463785 - 21463874
Alignment:
Q  334 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 423  Q
    |||||||||||| ||| || |||| |||||  || ||||| | ||| |||||||| |||| ||||||||||||||| |||||||| ||||    
T  21463785 caagaggattgagcacttgcccaataaagagtatggttccggacaaatcttctctgatcaaaaacaagaaagggtgatcagctacgaagt 21463874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 428
Target Start/End: Original strand, 20168618 - 20168721
Alignment:
Q  325 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 424  Q
    ||||| || |||||||||||| ||| || || ||||||| ||||||||| ||||| ||||| ||||| | ||| ||||| ||||||| | || ||||||     
T  20168618 atcactcatcaagaggattgagcacttgcccgacaaagaggattgttcccgtcaaatcttccctaattagaaataagaaggggtggttaacttcaaagtt 20168717  T
Q  425 tagt 428  Q
    ||||    
T  20168718 tagt 20168721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 428
Target Start/End: Complemental strand, 20359666 - 20359563
Alignment:
Q  325 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 424  Q
    ||||| || |||||||||||| ||| || || ||||||| ||||||||| ||||| ||||| ||||| | ||| ||||| ||||||| | || ||||||     
T  20359666 atcactcatcaagaggattgagcacttgcccgacaaagaggattgttcccgtcaaatcttccctaattagaaataagaaggggtggttaacttcaaagtt 20359567  T
Q  425 tagt 428  Q
    ||||    
T  20359566 tagt 20359563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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