View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350_low_16 (Length: 482)
Name: NF1350_low_16
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 133 - 422
Target Start/End: Complemental strand, 18191578 - 18191289
Alignment:
| Q |
133 |
aaacaatttggtagtttcaaatccaaatggataaaagatcatccatttatttatggagttgtttaaggaagattaagagaaatttctagacaatatattc |
232 |
Q |
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| T |
18191578 |
aaacaatatggtagtttcaaatccaaattgataaaagatcatccatttatttatggagttgtttaaggaagattaagagaaatttctagacaatatattc |
18191479 |
T |
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| Q |
233 |
aaccaatcatgccaatattttatcattcagatgatttatactttgtaaaagacagaaacctcctgataatggaaacaccacacaatctcttacaaaaatc |
332 |
Q |
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| T |
18191478 |
aaccaatcatgccaatattttatcattcagatgatttatactttgtaaaagacagaaacctcctgataatggaaacaccacacaatctcttacaaaaatc |
18191379 |
T |
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| Q |
333 |
tacactattgtacacagaccctgcattggacnnnnnnnngctataaccataaaaaggttgtgggacatgaaataaactagttccatcagg |
422 |
Q |
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| T |
18191378 |
tacactattgtacacagaccctgcattggacaaaaaaaagctattaccataaaaaggttgtgggacatgaaataaactagttccatcagg |
18191289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 94 - 453
Target Start/End: Complemental strand, 42277447 - 42277087
Alignment:
| Q |
94 |
gataatttcaaggaaaacaatttgcacttcatggaatctaaacaatttggtagtttcaaatccaaatggataaaagatcatccatttatttatggagttg |
193 |
Q |
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| T |
42277447 |
gataatttcaaggaaaaagattcgcacttcatgcaatctaaacaatttggtgatatcaaacccaaattgacaaaagatcatccatttatttatggagtta |
42277348 |
T |
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| Q |
194 |
tttaaggaagattaa--gagaaatttctagacaatatattcaaccaatcatgccaatattttatcattcagatgatttatactttgtaaaagacagaa-a |
290 |
Q |
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| T |
42277347 |
tttaaggaagattaagagagaaaaatttagacaatatattcaaccaatgatgccagtattttataattcagatgatttctgctaggaaaaagacggaata |
42277248 |
T |
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| Q |
291 |
cctcctgataatggaaacaccacacaatctcttacaaaaatctacactattgtacacagaccctgcattggacnnnnnnnngctataaccataaaaaggt |
390 |
Q |
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| T |
42277247 |
cctcctgataacggagacaccacacaacctcttacaaaaatctacaccgctgtacacagaccctgcattggacaaaaatcacctattaccataaaaaggt |
42277148 |
T |
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| Q |
391 |
tgtgggacatgaaataaactagttccatcaggtaaatatcataataagtatgtcagctacaca |
453 |
Q |
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| T |
42277147 |
tg-ggga-atgaaacaaactaattccatcaggtaaatatcataacaagtatgtcagctacaca |
42277087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 24235522 - 24235470
Alignment:
| Q |
307 |
acaccacacaatctcttacaaaaatctacactattgtacacagaccctgcatt |
359 |
Q |
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||||||||||| |||||||||||||| |||| | |||| ||||| |||||||| |
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| T |
24235522 |
acaccacacaacctcttacaaaaatccacaccagtgtatacagaacctgcatt |
24235470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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