View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350_low_17 (Length: 480)
Name: NF1350_low_17
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 384
Target Start/End: Original strand, 45096786 - 45097161
Alignment:
| Q |
9 |
gagatgaagcaagacccaaaatacattgataagctaaaaaggtacaatgaaaagaatgggatataagaccaaaccctcaaaaagagctaacaaaatcgta |
108 |
Q |
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| T |
45096786 |
gagatgaagcaagacccaaaatacattgataagctaaaaaggtacaatgaaaagaatgggatataagaccaaaccctcaaaaagagctaacaaaatcgta |
45096885 |
T |
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| Q |
109 |
aattgcaaaacctaatctatttctaatataatcgtctctaatttggttaggcaactgagaccaccaagcataagaactcaaacttaaacgaagattagca |
208 |
Q |
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| T |
45096886 |
aattgtaaaacctaatctatttctaatatagtcgtctctaatttggttaggcaactgaaaccaccaagcataagaactcaaacttaaacgaagattagca |
45096985 |
T |
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| Q |
209 |
agctaatcagcacattgatttactgctctgtaaatgtgaatagaatgaaatagaaggacgtagaggaaatgaaatagagacaattctctcatctgttctt |
308 |
Q |
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| T |
45096986 |
agctaatcagcacgttgatttactgctctgtaaatgtgaatagaatgaaatagaaggacgtagaggaaatgaaatagagacaattctctcatctgttctt |
45097085 |
T |
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| Q |
309 |
caatcaacggccaagggacaaccttagaagacttgaaagccaagaaaacaagcatatttctcatgagcactttatg |
384 |
Q |
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| T |
45097086 |
caatcaacggccacgggacaaccttagaagacttgaaagccaagaaaacaagcatatttctcatgagcactctatg |
45097161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 359
Target Start/End: Original strand, 11775891 - 11775932
Alignment:
| Q |
318 |
gccaagggacaaccttagaagacttgaaagccaagaaaacaa |
359 |
Q |
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| T |
11775891 |
gccaagggacaaccttagaagacttgaaagctaagaaaacaa |
11775932 |
T |
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