View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1350_low_21 (Length: 453)
Name: NF1350_low_21
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 10 - 425
Target Start/End: Original strand, 14748110 - 14748525
Alignment:
| Q |
10 |
aagaatattgaaacgattgagcgaaggagcattaaagtactgtataacaactggcatttattgattaatctaagagtatttctctcgaccagagaacaca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14748110 |
aagaatattgaaacgattgagcgaaggagcattaaagtactgtataacaactggcatttattgattaatctaagagtatttctctcgaccagagaacaca |
14748209 |
T |
|
| Q |
110 |
taactgcatagaagggaaaaacattcatggttttacaaagtttagagggctaattaattattaaaacataactgcatcataaaactgacttaatcgcagc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14748210 |
taactgcatagaagggaaaaacattcatggttttacaaagtttagagggctaattaattattaaaacataactgcatcataaaactgacttaatcgcagc |
14748309 |
T |
|
| Q |
210 |
agtatcggaaattaacatagatattaaaaataatattgagagaggacatacaaaatattgatgacagagttcagtcgaatgatgcgtcttcgggagagaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14748310 |
agtatcggaaattaacatagatattaaaaataatattgagagaggacatacaaaatattgatgacagagttcagtcgaatgatgcgtcttcgggagagaa |
14748409 |
T |
|
| Q |
310 |
cagttaccctatgtggataaccaaatgtagcaaacaattgaaacaaatttcctctaatgttgaaacaaattttcctgtatatactttccaatgttgaaac |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14748410 |
tagttaccctatgtggataaccaaatgtagcaaacaattgaaacaaatttcctctaatgttgaaacaaattttcctgtatatactttccaatgttgaaac |
14748509 |
T |
|
| Q |
410 |
caattttcctgtatat |
425 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14748510 |
caattttcctgtatat |
14748525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 14748499 - 14748548
Alignment:
| Q |
365 |
aatgttgaaacaaattttcctgtatatactttccaatgttgaaaccaatt |
414 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
14748499 |
aatgttgaaaccaattttcctgtatatactttctaatgttgaaaacaatt |
14748548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University