View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1350_low_26 (Length: 435)

Name: NF1350_low_26
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1350_low_26
NF1350_low_26
[»] chr4 (17 HSPs)
chr4 (58-259)||(39420718-39420919)
chr4 (85-214)||(41117677-41117806)
chr4 (68-216)||(49747769-49747917)
chr4 (67-124)||(25754208-25754265)
chr4 (67-249)||(16832711-16832892)
chr4 (85-215)||(19311075-19311205)
chr4 (149-248)||(48098544-48098641)
chr4 (143-249)||(22810928-22811032)
chr4 (67-122)||(46487615-46487670)
chr4 (69-214)||(38636927-38637072)
chr4 (69-113)||(35336914-35336958)
chr4 (67-126)||(28967206-28967265)
chr4 (66-117)||(48098646-48098697)
chr4 (79-124)||(41231445-41231489)
chr4 (100-160)||(53823146-53823207)
chr4 (69-109)||(19432386-19432426)
chr4 (206-246)||(19673309-19673349)
[»] chr1 (16 HSPs)
chr1 (93-192)||(6582968-6583068)
chr1 (67-236)||(34775092-34775262)
chr1 (66-236)||(32882587-32882758)
chr1 (67-254)||(11439711-11439898)
chr1 (68-249)||(46768391-46768566)
chr1 (85-194)||(32863255-32863365)
chr1 (85-127)||(38546892-38546934)
chr1 (67-124)||(9313031-9313088)
chr1 (67-124)||(27102515-27102572)
chr1 (78-128)||(2987824-2987874)
chr1 (68-122)||(42374519-42374573)
chr1 (78-123)||(16149110-16149155)
chr1 (85-114)||(37200485-37200514)
chr1 (67-115)||(18844971-18845019)
chr1 (67-126)||(19598981-19599041)
chr1 (67-123)||(38544407-38544463)
[»] scaffold1384 (1 HSPs)
scaffold1384 (76-243)||(1351-1523)
[»] scaffold0050 (1 HSPs)
scaffold0050 (67-254)||(36912-37097)
[»] chr8 (8 HSPs)
chr8 (69-254)||(8862314-8862502)
chr8 (67-249)||(12197766-12197948)
chr8 (67-249)||(12442194-12442376)
chr8 (55-216)||(17656415-17656577)
chr8 (77-236)||(10248266-10248427)
chr8 (147-248)||(43312410-43312511)
chr8 (85-118)||(10552608-10552641)
chr8 (85-118)||(30235825-30235858)
[»] chr5 (19 HSPs)
chr5 (67-201)||(30097588-30097723)
chr5 (56-254)||(14302124-14302322)
chr5 (68-254)||(26045655-26045841)
chr5 (67-176)||(26405239-26405348)
chr5 (55-124)||(33258568-33258637)
chr5 (67-170)||(7682840-7682943)
chr5 (121-247)||(7391743-7391869)
chr5 (45-179)||(5187220-5187355)
chr5 (89-193)||(7195014-7195118)
chr5 (67-171)||(8297757-8297860)
chr5 (111-211)||(21398054-21398155)
chr5 (67-128)||(24071952-24072013)
chr5 (79-132)||(25657823-25657875)
chr5 (64-117)||(31742504-31742557)
chr5 (86-154)||(37108102-37108170)
chr5 (67-169)||(4914190-4914294)
chr5 (77-125)||(13953949-13953997)
chr5 (67-130)||(23426627-23426690)
chr5 (143-213)||(33109965-33110035)
[»] chr3 (12 HSPs)
chr3 (67-254)||(50518780-50518964)
chr3 (67-236)||(33143643-33143811)
chr3 (70-178)||(14194209-14194317)
chr3 (143-245)||(37123593-37123695)
chr3 (67-125)||(25594199-25594257)
chr3 (67-124)||(4171077-4171134)
chr3 (67-116)||(14280240-14280289)
chr3 (67-124)||(25648016-25648073)
chr3 (69-124)||(14893263-14893318)
chr3 (85-179)||(48893062-48893156)
chr3 (67-128)||(45354599-45354660)
chr3 (67-123)||(37998900-37998956)
[»] chr2 (16 HSPs)
chr2 (85-249)||(37770359-37770514)
chr2 (67-216)||(4974985-4975135)
chr2 (67-216)||(4992893-4993043)
chr2 (67-249)||(34230410-34230591)
chr2 (67-124)||(4472276-4472333)
chr2 (86-211)||(41113450-41113573)
chr2 (67-128)||(22884805-22884866)
chr2 (147-214)||(12343060-12343127)
chr2 (67-124)||(13337583-13337640)
chr2 (67-170)||(7696248-7696351)
chr2 (67-126)||(27740319-27740378)
chr2 (57-115)||(29997287-29997345)
chr2 (85-130)||(16952053-16952098)
chr2 (85-130)||(17022718-17022763)
chr2 (67-128)||(33788316-33788377)
chr2 (67-123)||(44594012-44594068)
[»] chr7 (16 HSPs)
chr7 (68-196)||(16954750-16954878)
chr7 (55-117)||(36674810-36674872)
chr7 (105-179)||(6492859-6492934)
chr7 (67-196)||(16828791-16828920)
chr7 (67-112)||(28534195-28534240)
chr7 (67-249)||(33719174-33719355)
chr7 (77-123)||(3478683-3478729)
chr7 (67-247)||(6716427-6716608)
chr7 (67-123)||(23983578-23983634)
chr7 (76-132)||(26385857-26385912)
chr7 (85-126)||(2331792-2331832)
chr7 (85-126)||(2339325-2339365)
chr7 (201-254)||(8745357-8745410)
chr7 (67-124)||(42532950-42533007)
chr7 (98-185)||(24324520-24324607)
chr7 (85-124)||(25438690-25438730)
[»] scaffold0063 (1 HSPs)
scaffold0063 (67-246)||(58339-58518)
[»] chr6 (5 HSPs)
chr6 (67-177)||(15120293-15120404)
chr6 (191-249)||(3880411-3880469)
chr6 (77-128)||(17278163-17278214)
chr6 (86-132)||(20500278-20500323)
chr6 (189-249)||(20701614-20701674)
[»] scaffold1613 (1 HSPs)
scaffold1613 (67-123)||(686-742)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 9e-77; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 58 - 259
Target Start/End: Original strand, 39420718 - 39420919
Alignment:
58 gaaattagaaatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataacaccaccaaaatacacg 157  Q
    |||||||| |||| |||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||||||  |||||||||||||||||||||    
39420718 gaaattaggaatataaataaaaggtgtcgtatataggcggaacacccgaaaatgaacaccataaaaaacactcatgagcataacaccaccaaaatacacg 39420817  T
158 tcaccatctaaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaaaaagaccctac 257  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||    
39420818 tcaccatctaaaactgactcctacacgagaacaaccaccgtataaacgatatccaacaccacccgtcgtcactactcacacccaaagaaaaagacccaac 39420917  T
258 ac 259  Q
    ||    
39420918 ac 39420919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 85 - 214
Target Start/End: Original strand, 41117677 - 41117806
Alignment:
85 cgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatctaaaactgactcctacac 183  Q
    ||||||||||||||||| ||||||||||||||| |||| ||||| ||||| || |||| |||||||||||||  |||||| ||| ||| ||||| | |||    
41117677 cgtatataggcggaacacccgaaaataaacaccctaaataacac-catgaggacaacacccaccaaaatacatatcaccacctagaacagactcatgcac 41117775  T
184 gagaacaaccactatataaacgatatccaac 214  Q
    || |||||||  | || ||||||||||||||    
41117776 gaaaacaaccgttgtaaaaacgatatccaac 41117806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 49747917 - 49747769
Alignment:
68 atacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatct 166  Q
    ||||||| ||||| |  |||||||| ||||||||||| |||||||||||||||||||||||   ||| || |||| |||||||||| || ||||||| ||    
49747917 atacaaacaaaagacatcgtatatatgcggaacatccaaaaataaacaccataaaaaacacctctgaggacaacacccaccaaaattcatgtcaccacct 49747818  T
167 aaaactgactcctacacgagaacaaccactatataaacgatatccaacac 216  Q
    ||||| ||||| | ||||| ||| |||| | || |||||| |||||||||    
49747817 aaaacagactctttcacgaaaacgaccattgtaaaaacga-atccaacac 49747769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 25754265 - 25754208
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaa 124  Q
    ||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||||    
25754265 aatacaaataaaaagcgccgtatatagacggaacatctgaaaataaacaccataaaaa 25754208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 16832711 - 16832892
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataacaccaccaaaatacacgtcaccatct 166  Q
    |||||||| ||||||||  | |||||||||||||| |  |||||||||||| | |||||| ||| ||| || ||||||  | ||||| ||||||||| ||    
16832711 aatacaaacaaaaggcgctgcatataggcggaacaccaaaaaataaacaccct-aaaaactctcctgaggacaacacccaccaaataaacgtcaccacct 16832809  T
167 aaaactgactcctacacg-agaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaaaaa 249  Q
    |||||  | |||| |||| | ||| ||| || || ||| |||||||||||| | | ||||||||||||||| ||||||||||||    
16832810 aaaacatattcctgcacgaaaaacgaccgctgtaaaaaagatatccaacaccacccgtcgtcactactcac-cccaaagaaaaa 16832892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 19311075 - 19311205
Alignment:
85 cgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataacacc-accaaaatacacgtcaccatctaaaactgactcctacac 183  Q
    |||| ||||||||||||||||||| |||||||| |||||| | | | ||  ||||||||| ||||||||||||||||||| |  |||| || |||| |||    
19311075 cgtaaataggcggaacatccgaaattaaacaccctaaaaa-ctcccctggggataacacccaccaaaatacacgtcaccaccataaacagattccttcac 19311173  T
184 gagaacaaccactatataaacgatatccaaca 215  Q
    || ||| | |||| || |||||||||||||||    
19311174 gaaaacgagcactgtaaaaacgatatccaaca 19311205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 248
Target Start/End: Complemental strand, 48098641 - 48098544
Alignment:
149 aaatacacgtcaccatctaaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaaaa 248  Q
    ||||||||||||||| |||||||  |||| | ||| | ||| |||||| || |||||||||||| ||| | | ||||||||||||||| |||||||||||    
48098641 aaatacacgtcaccacctaaaac--actctttcacaaaaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaaaa 48098544  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 22810928 - 22811032
Alignment:
143 ccaccaaaatacacgtcaccatctaaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaa 242  Q
    ||||||||||||||||||||  ||||||| |||| || ||||| | | |||||| || |||||||||||   || |||  |||||||||||||| |||||    
22810928 ccaccaaaatacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcc--taccatccatcgtcactactcacccccaa 22811025  T
243 agaaaaa 249  Q
    |||||||    
22811026 agaaaaa 22811032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 46487670 - 46487615
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaa 122  Q
    ||||||||  ||||||  |||||||||||||||||||||||||||||||| |||||    
46487670 aatacaaactaaaggcatcgtatataggcggaacatccgaaaataaacacaataaa 46487615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 214
Target Start/End: Original strand, 38636927 - 38637072
Alignment:
69 tacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatcta 167  Q
    |||||| || ||||| ||||| ||||||||||| | ||||||||||||| |||| || || |  || || |||| |||| |||||||| ||||||| |||    
38636927 tacaaacaagaggcgccgtat-taggcggaacacctgaaaataaacaccttaaataaaacccccgaggacaacacccacgaaaatacatgtcaccaccta 38637025  T
168 aaactgactcctacacgagaacaaccactatataaacgatatccaac 214  Q
    ||||  |||||| ||||| ||||||| || || ||| ||||||||||    
38637026 aaacaaactccttcacgaaaacaaccgctgtaaaaatgatatccaac 38637072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 35336958 - 35336914
Alignment:
69 tacaaataaaaggcgacgtatataggcggaacatccgaaaataaa 113  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||    
35336958 tacaaacaaaaggcgccgtatatagacggaacatccgaaaataaa 35336914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 28967265 - 28967206
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaac 126  Q
    ||||||||  |||||||  |||||||||||||||| | ||||||||||||| ||||||||    
28967265 aatacaaacgaaaggcgctgtatataggcggaacacctgaaaataaacaccctaaaaaac 28967206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 48098697 - 48098646
Alignment:
66 aaatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacacc 117  Q
    ||||||||| ||||| ||  |||||||||||||||| |||||||||||||||    
48098697 aaatacaaacaaaagacgcagtatataggcggaacacccgaaaataaacacc 48098646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 41231445 - 41231489
Alignment:
79 aggcgacgtatataggcggaacatccgaaaataaacaccataaaaa 124  Q
    ||||| ||||||||| |||||||||| |||||||||||||||||||    
41231445 aggcgccgtatatagacggaacatcc-aaaataaacaccataaaaa 41231489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 53823146 - 53823207
Alignment:
100 catccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtca 160  Q
    |||| ||||||||||||| ||||||| || | ||| ||||||| ||||||||||||||||||    
53823146 catctgaaaataaacaccctaaaaaatacccctgaggataacacccaccaaaatacacgtca 53823207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 19432426 - 19432386
Alignment:
69 tacaaataaaaggcgacgtatataggcggaacatccgaaaa 109  Q
    |||||| |||||||| ||||||||| |||||||||||||||    
19432426 tacaaacaaaaggcgccgtatatagacggaacatccgaaaa 19432386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 19673349 - 19673309
Alignment:
206 atatccaacactatctgtcgtcactactcacacccaaagaa 246  Q
    ||||||||||| ||| ||||||||||||||| |||||||||    
19673349 atatccaacaccatccgtcgtcactactcacccccaaagaa 19673309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 93 - 192
Target Start/End: Original strand, 6582968 - 6583068
Alignment:
93 ggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatctaaaactgactcctacacgagaacaa 191  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||    
6582968 ggcggaacacccgaaaataaacaccataaaaaacactcatgatgataacacccaccaaaatacacgtcaccacctaaaacagactcctacacgagaacaa 6583067  T
192 c 192  Q
    |    
6583068 c 6583068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 67 - 236
Target Start/End: Complemental strand, 34775262 - 34775092
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataacacc-accaaaatacacgtcaccatc 165  Q
    ||||||||  ||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||  |||| || |||||| |||||||||||||||| || |    
34775262 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccttaaaaaataccaatgaggacaacacccaccaaaatacacgtcatcacc 34775163  T
166 taaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcac 236  Q
    |||||| ||||||| ||||| ||| || ||| || |||||| |||| |||||| | |||||||||||||||    
34775162 taaaacagactccttcacgaaaacgacaactgtaaaaacgaaatcccacactacccgtcgtcactactcac 34775092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 32882758 - 32882587
Alignment:
66 aaatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccat 164  Q
    |||||||||  ||||||| ||||||||||| ||||| ||||||||||||||| ||||| |||| |  || || |||| ||||||||||| || |||||      
32882758 aaatacaaactaaaggcgccgtatataggcagaacacccgaaaataaacaccctaaaagacacccccgaggacaacacccaccaaaatatacatcaccgc 32882659  T
165 ctaaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcac 236  Q
    ||||||||||||||| ||||| ||| | |||| || | |||||||||||||| | |  ||||||||||||||    
32882658 ctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacaccacccatcgtcactactcac 32882587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 254
Target Start/End: Original strand, 11439711 - 11439898
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatc 165  Q
    |||||||| |||||||||| ||||||| ||||||||||||||||||||||| |  ||||  | | ||| || |||| ||||||||||||||||||||| |    
11439711 aatacaaacaaaaggcgacatatatagacggaacatccgaaaataaacaccct--aaaatccccctgaagacaacatccaccaaaatacacgtcaccacc 11439808  T
166 taaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactact-cacacccaaagaaaaagaccc 254  Q
    |||||| ||  ||| ||||| | |||||||  || ||| |||||||||||| |  | ||||||||||| ||| |||||||||||| ||||    
11439809 taaaacagatcccttcacgaaagcaaccaccgtaaaaatgatatccaacaccacttatcgtcactactccacccccaaagaaaaacaccc 11439898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 249
Target Start/End: Complemental strand, 46768566 - 46768391
Alignment:
68 atacaaataaaaggcgac-gtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatc 165  Q
    ||||||| |||||||| | |||| ||||||||||| ||||||||||||||| |||||||||| |  || || |||| |||||||||| |||||||||| |    
46768566 atacaaacaaaaggcgcccgtatgtaggcggaacacccgaaaataaacaccctaaaaaacacccccgaggacaacacccaccaaaattcacgtcaccacc 46768467  T
166 taaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaaaaa 249  Q
    |||||| ||||||| ||||| ||| |||||        ||||||||||||||  |  |||||||||||||| ||||||||||||    
46768466 taaaacagactccttcacgaaaacgaccac--------cgatatccaacactgcccatcgtcactactcacccccaaagaaaaa 46768391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 32863255 - 32863365
Alignment:
85 cgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatctaaaactgactcctacac 183  Q
    ||||||||||||||||| | ||||||||||||||  |||||||| || || || |||| ||||||| ||||||||||||  ||||||| || |||| |||    
32863255 cgtatataggcggaacacctgaaaataaacaccaagaaaaacacccaagaggacaacacccaccaacatacacgtcaccgcctaaaacagaatcctccac 32863354  T
184 gagaacaacca 194  Q
    || ||| ||||    
32863355 gaaaacgacca 32863365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 38546892 - 38546934
Alignment:
85 cgtatataggcggaacatccgaaaataaacaccataaaaaaca 127  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
38546892 cgtatataggcggaacatccgaaaataaaaaccataaaaaaca 38546934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 9313031 - 9313088
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaa 124  Q
    |||||||  |||||||| ||||||||||||||||| ||||||||||||||| ||||||    
9313031 aatacaatcaaaaggcgtcgtatataggcggaacacccgaaaataaacaccctaaaaa 9313088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 27102572 - 27102515
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaa 124  Q
    |||||||| |||||| | ||||||||||||||||| ||||||||||||||| ||||||    
27102572 aatacaaacaaaaggtgccgtatataggcggaacacccgaaaataaacaccctaaaaa 27102515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 2987824 - 2987874
Alignment:
78 aaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacac 128  Q
    |||||| ||||||||||||||||||||||||| ||||||||  ||||||||    
2987824 aaggcgccgtatataggcggaacatccgaaaacaaacaccaacaaaaacac 2987874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 42374573 - 42374519
Alignment:
68 atacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaa 122  Q
    ||||||| ||| |||| | ||||||||||||||| ||||||||||||| ||||||    
42374573 atacaaacaaagggcgccatatataggcggaacacccgaaaataaacatcataaa 42374519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 16149155 - 16149110
Alignment:
78 aaggcgacgtatataggcggaacatccgaaaataaacaccataaaa 123  Q
    |||||| |||||||||||||||||  |||||||||||||| |||||    
16149155 aaggcgccgtatataggcggaacacgcgaaaataaacaccctaaaa 16149110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 37200514 - 37200485
Alignment:
85 cgtatataggcggaacatccgaaaataaac 114  Q
    ||||||||||||||||||||||||||||||    
37200514 cgtatataggcggaacatccgaaaataaac 37200485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 18844971 - 18845019
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaaca 115  Q
    |||||||| |||||||| ||| ||||| ||||| |||||||||||||||    
18844971 aatacaaacaaaaggcgtcgtgtatagacggaatatccgaaaataaaca 18845019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 19599041 - 19598981
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaa-taaacaccataaaaaac 126  Q
    |||||||  |||||||| ||||||||||||||||| | ||||| |||||||||| ||||||    
19599041 aatacaataaaaaggcgccgtatataggcggaacacctgaaaagtaaacaccatgaaaaac 19598981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 38544407 - 38544463
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaa 123  Q
    ||||||||  |||| || |||||||| | |||||| |||||||||||||||||||||    
38544407 aatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaa 38544463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 1351 - 1523
Alignment:
76 aaaaggcgacgtatataggcggaacatccgaaaa-taaacaccataaaaaacactcatgatgataaca----ccaccaaaatacacgtcaccatctaaaa 170  Q
    |||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||| | | | || ||||    |||| |||||||||||||||| ||||||    
1351 aaaaggcgccgtatataggcagaacacccgaaaaataaacaccataaaaaacacccctaaggacaacaaaacccacaaaaatacacgtcaccacctaaaa 1450  T
171 ctgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaa 243  Q
    |||||||||||||||||||||||||| || |||||||||||||||| |   |||||||||||| || ||||||    
1451 ctgactcctacacgagaacaaccactgtaaaaacgatatccaacaccacacgtcgtcactactgacccccaaa 1523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 67 - 254
Target Start/End: Complemental strand, 37097 - 36912
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatc 165  Q
    |||||||| ||||| ||  ||||||||||||||||||||||||||||||||||||||||||| ||||| ||  ||| ||| ||||||||||||||||| |    
37097 aatacaaacaaaagacgctgtatataggcggaacatccgaaaataaacaccataaaaaacacccatgaggaccacacccaacaaaatacacgtcaccacc 36998  T
166 taaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaaaaagaccc 254  Q
    |||||| ||||||| ||||| ||| |||||| || |||||| |||||  || |||   ||||||||||||| |||||||||||| ||||    
36997 taaaacagactccttcacga-aaccaccactgtaaaaacgacatcca--accatccaccgtcactactcacccccaaagaaaaacaccc 36912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 69 - 254
Target Start/End: Original strand, 8862314 - 8862502
Alignment:
69 tacaaataaaaggcgacgtatataggcggaacatccgaaaa-taaacaccataaaaaacactcatgatgataacacc-accaaaatacacgtcaccatct 166  Q
    |||||| |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| |   | || |||||| || |||||||||||||||| ||    
8862314 tacaaacaaaaggcgccgtatatagacggaacatccgaaaaataaacaccataaaaaacaccccgaaggacaacacccacaaaaatacacgtcaccacct 8862413  T
167 aaaactgactcctacacgagaacaaccactatataaacgatatcc-aacactatctgtcgtcactactcacacccaaagaaaaagaccc 254  Q
    ||||||||||| |||||||||||||||| | || |||| |||||| ||||| |   |||||||||||| || |||||||||||| ||||    
8862414 aaaactgactcttacacgagaacaaccattgtaaaaacaatatccaaacaccacacgtcgtcactactgactcccaaagaaaaacaccc 8862502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 12197766 - 12197948
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataacaccaccaaaatacacgtcaccatct 166  Q
    ||||||||  ||||||| ||| |||||||||||||   ||||||||||||| ||||| ||||   ||  || |||||||| |||||||||||||||| ||    
12197766 aatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaagacacctctggggacaacaccacaaaaatacacgtcaccacct 12197865  T
167 aaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaaaaa 249  Q
    | ||| ||| ||| || ||  || ||||||| | |||||||||||| ||| | | ||||||||||||||| ||||||||||||    
12197866 acaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaaaaa 12197948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 12442194 - 12442376
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataacaccaccaaaatacacgtcaccatct 166  Q
    ||||||||  ||||||| ||| |||||||||||||   ||||||||||||| ||||| ||||   ||  || |||||||| |||||||||||||||| ||    
12442194 aatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaagacacctctggggacaacaccacaaaaatacacgtcaccacct 12442293  T
167 aaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaaaaa 249  Q
    | ||| ||| ||| || ||  || ||||||| | |||||||||||| ||| | | ||||||||||||||| ||||||||||||    
12442294 acaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaaaaa 12442376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 216
Target Start/End: Original strand, 17656415 - 17656577
Alignment:
55 ggtgaaattagaaatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataacacc-accaaaata 153  Q
    |||||||||  | ||| ||| |||||||| ||||||||| ||||||| |||||||| |||||| |||||| ||| | ||| || |||||| ||||||||     
17656415 ggtgaaattgaacatataaacaaaaggcgtcgtatatagacggaacacccgaaaattaacaccctaaaaa-cacccttgaggacaacacccaccaaaatt 17656513  T
154 cacgtcaccatctaaaactgactcctacacg-agaacaaccactatataaacgatatccaacac 216  Q
    |||||||||||||||||| ||||||| || | | ||| ||||||  | ||||||||||||||||    
17656514 cacgtcaccatctaaaacagactccttcaagaaaaacgaccactgcaaaaacgatatccaacac 17656577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 10248266 - 10248427
Alignment:
77 aaaggcgacgtatataggcggaacatccgaaaataaa-caccataaaaaacactcatgatgataacacca-ccaaaatacacgtcaccatctaaaactga 174  Q
    ||||||| ||||||||||||||||| || |||| ||| |||| |||||||||| | ||| || ||||||  |||||||||||||||||| |||||||  |    
10248266 aaaggcgtcgtatataggcggaacaccctaaaaaaaaacaccttaaaaaacacccttgaggacaacacccgccaaaatacacgtcaccacctaaaacaaa 10248365  T
175 ctcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcac 236  Q
    ||||| ||||| ||| |||||| || |||||| |||| |||  | |  ||||||||||||||    
10248366 ctccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcac 10248427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 43312410 - 43312511
Alignment:
147 caaaatacacgtcaccatctaaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaa 246  Q
    ||||||||| ||||||| ||||| | ||||||||||| | ||| |||||| || ||||||||||| |||| ||   |||||||||||| | ||||| |||    
43312410 caaaatacatgtcaccacctaaatcagactcctacacaaaaacgaccactgtaaaaacgatatcccacaccatacatcgtcactactcgcccccaacgaa 43312509  T
247 aa 248  Q
    ||    
43312510 aa 43312511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 10552641 - 10552608
Alignment:
85 cgtatataggcggaacatccgaaaataaacacca 118  Q
    ||||||||||||||||||||||||| ||||||||    
10552641 cgtatataggcggaacatccgaaaacaaacacca 10552608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 30235825 - 30235858
Alignment:
85 cgtatataggcggaacatccgaaaataaacacca 118  Q
    ||||||||||||||||||||||||| ||||||||    
30235825 cgtatataggcggaacatccgaaaacaaacacca 30235858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 30097723 - 30097588
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatc 165  Q
    ||||||||  |||| || ||||||||||||||||| ||||||||||||||| |||||||||  |||||||| |||| ||||||||||||||||||||| |    
30097723 aatacaaactaaagacgccgtatataggcggaacacccgaaaataaacaccctaaaaaacatccatgatgacaacacccaccaaaatacacgtcaccacc 30097624  T
166 taaaactgactcctacacgagaacaaccactatata 201  Q
    |||||| ||||||| ||||| ||||| |||| ||||    
30097623 taaaacagactccttcacgaaaacaagcactttata 30097588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 56 - 254
Target Start/End: Original strand, 14302124 - 14302322
Alignment:
56 gtgaaattagaaatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataacacc-accaaaatac 154  Q
    ||||||||  ||||| ||| || || || |||||||||  |||||| || |||||||| | | |||||| ||| | |||||| |||||| ||||||||||    
14302124 gtgaaattgaaaatataaacaagagacgccgtatatagaaggaacacccaaaaataaaaatcctaaaaa-cacccctgatgacaacacccaccaaaatac 14302222  T
155 acgtcaccatctaaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaaaaagaccc 254  Q
    ||||||||| ||||||| || |||| | ||| ||| |||| | || |||||||||||||||| | ||||||||||||||||  |||||||||||| ||||    
14302223 acgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactcatccccaaagaaaaataccc 14302322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 68 - 254
Target Start/End: Original strand, 26045655 - 26045841
Alignment:
68 atacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatct 166  Q
    ||||||| |||||||| ||||||||| |||||||||| |||||||||||| |||||||| | | ||| || |||| |||||||||| |||||||||| ||    
26045655 atacaaacaaaaggcgccgtatatagacggaacatccaaaaataaacaccctaaaaaacgcccctgaggacaacacccaccaaaattcacgtcaccacct 26045754  T
167 aaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaaaaagaccc 254  Q
    ||||| |||| || || || ||  |||||  || |||||| |||||||||   |  |||||||||||||| |||||||||||| ||||    
26045755 aaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactcac-cccaaagaaaaacaccc 26045841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 26405239 - 26405348
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataac-accaccaaaatacacgtcaccatc 165  Q
    |||||||| |||||||| ||||||||| ||||||| ||||||||||||||| | |||||||| | ||| || ||| |||||||||||||||||||||| |    
26405239 aatacaaacaaaaggcgtcgtatatagtcggaacacccgaaaataaacacc-ttaaaaacacccctgaggacaacaaccaccaaaatacacgtcaccacc 26405337  T
166 taaaactgact 176  Q
    |||||| ||||    
26405338 taaaacagact 26405348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 33258568 - 33258637
Alignment:
55 ggtgaaattagaaatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaa 124  Q
    ||||||||| ||||||||||||||||||| |||||||| | | |||| ||||||||||||||||||||||    
33258568 ggtgaaattggaaatacaaataaaaggcgccgtatatatgtgaaacacccgaaaataaacaccataaaaa 33258637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 7682943 - 7682840
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatc 165  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| ||||  |||||| ||| ||||  | |||| |||||||||||||| |||||| |    
7682943 aatacaaattaaaggcgtcgtatataggcggaacatccgaaaataagcacc-caaaaaatacttatgagaacaacacccaccaaaatacacatcaccacc 7682845  T
166 taaaa 170  Q
    |||||    
7682844 taaaa 7682840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 121 - 247
Target Start/End: Original strand, 7391743 - 7391869
Alignment:
121 aaaaacactcatgatgataacaccaccaaaatacacgtcaccatctaaaactgactcctacacgagaacaaccactatataaacgatatccaacactatc 220  Q
    |||||||| ||||| || ||||||| ||||||||| ||||||| |||||| ||| |||| ||||  ||  |||||| || |||||| ||||  |||   |    
7391743 aaaaacacccatgaggacaacaccatcaaaatacatgtcaccacctaaaattgattcctccacggaaaagaccactgtaaaaacgaaatcccgcacagcc 7391842  T
221 tgtcgtcactactcacacccaaagaaa 247  Q
    |||||||||||||||| ||||||||||    
7391843 tgtcgtcactactcacccccaaagaaa 7391869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 5187355 - 5187220
Alignment:
45 gagcagagat-ggtgaaattagaaatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca- 142  Q
    |||||||||| |||||||||   |||||||| |||||||| || ||||||  | | || ||||||||||||||||| |||| ||||||||| |||||||     
5187355 gagcagagatcggtgaaattgagaatacaaacaaaaggcgccgcatatagatgaagcacccgaaaataaacaccat-aaaagcactcatgaggataacat 5187257  T
143 ccaccaaaatacacgtcaccatctaaaactgactcct 179  Q
    ||||| || ||||| |||||| ||||| | |||||||    
5187256 ccacccaagtacacatcaccacctaaaccagactcct 5187220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 7195014 - 7195118
Alignment:
89 tataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataacacc-accaaaatacacgtcaccatctaaaactgactcctacacgaga 187  Q
    |||| ||||||||||| |||||||||||| |||||| |||   ||  || |||||| ||||||||||||||||||| ||||||| ||||||| ||| | |    
7195014 tatatgcggaacatccaaaaataaacaccctaaaaa-caccgctgcggacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacaaaa 7195112  T
188 acaacc 193  Q
    ||||||    
7195113 acaacc 7195118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 8297860 - 8297757
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatc 165  Q
    |||||||| ||||||||  ||| |||||||||||| | ||||||| ||||| |||||| ||| | ||| ||||||| |||||||||||||| |||||| |    
8297860 aatacaaa-aaaaggcgttgtacataggcggaacacctgaaaatacacaccctaaaaa-cacccctgaggataacatccaccaaaatacacatcaccacc 8297763  T
166 taaaac 171  Q
    ||||||    
8297762 taaaac 8297757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 21398054 - 21398155
Alignment:
111 aaacaccataaaaaacactcatgatgataacacc-accaaaatacacgtcaccatctaaaactgactcctacacgagaacaaccactatataaacgatat 209  Q
    ||||||| |||||||||| | ||| || |||||  || |||||||||||||||||||||||| ||| ||| ||||| |||||||  | || |||||||||    
21398054 aaacaccttaaaaaacacccctgaggacaacacttacaaaaatacacgtcaccatctaaaacagacgccttcacgaaaacaacctttgtaaaaacgatat 21398153  T
210 cc 211  Q
    ||    
21398154 cc 21398155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 24071952 - 24072013
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacac 128  Q
    ||||||||  || |||| ||||||||||||||||| ||||||||||||| ||||||| ||||    
24071952 aatacaaactaagggcgccgtatataggcggaacacccgaaaataaacatcataaaagacac 24072013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 25657823 - 25657875
Alignment:
79 aggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcat 132  Q
    ||||| ||||||||||| ||||| || |||||||||||||||||||||||||||    
25657823 aggcgccgtatataggcagaaca-cctaaaataaacaccataaaaaacactcat 25657875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 31742557 - 31742504
Alignment:
64 agaaatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacacc 117  Q
    |||| |||||| |||||||| ||||||||||||||||| ||||||| |||||||    
31742557 agaagtacaaacaaaaggcgccgtatataggcggaacacccgaaaacaaacacc 31742504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 37108170 - 37108102
Alignment:
86 gtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatac 154  Q
    ||||||||||||||||||  |||||||||||| | |||||||| ||||| ||||||| ||||||||||||    
37108170 gtatataggcggaacatcaaaaaataaacaccct-aaaaacacccatgaggataacacccaccaaaatac 37108102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 4914190 - 4914294
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacac-cataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccat 164  Q
    ||||| ||| ||||| | |||||||| ||||||||||||| ||||||| | |  ||||||||||| ||| ||| ||| |||||||||||||| ||||||     
4914190 aatactaattaaaggtgtcgtatatatgcggaacatccgataataaaccctctaaaaaaacactcctgaggattacacccaccaaaatacacttcaccac 4914289  T
165 ctaaa 169  Q
    |||||    
4914290 ctaaa 4914294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 13953949 - 13953997
Alignment:
77 aaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaa 125  Q
    ||||||| ||||||||||||||||| | ||||||||||||| |||||||    
13953949 aaaggcgccgtatataggcggaacacctgaaaataaacaccttaaaaaa 13953997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 23426690 - 23426627
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactc 130  Q
    ||||||| ||||||| | ||||||||||||||||| ||||||||| || ||| | |||||||||    
23426690 aatacaactaaaaggtgccgtatataggcggaacacccgaaaatacactccaaacaaaacactc 23426627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 33109965 - 33110035
Alignment:
143 ccaccaaaatacacgtcaccatctaaaactgactcctacacgagaacaaccactatataaacgatatccaa 213  Q
    |||||||||||||||||| || |||||||  || ||| ||||| ||| |||||| || |||||||||||||    
33109965 ccaccaaaatacacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaaaacgatatccaa 33110035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 67 - 254
Target Start/End: Original strand, 50518780 - 50518964
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatc 165  Q
    |||||||| |||||| | ||||||||||||||||| ||||||||||||||| | |||||||| ||||| ||  ||| ||| |||||||||| ||||||||    
50518780 aatacaaacaaaaggtgtcgtatataggcggaacacccgaaaataaacaccct-aaaaacacccatgaggaccacacccaacaaaatacacctcaccatc 50518878  T
166 taaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaaaaagaccc 254  Q
    |||||| ||||||| |||||  || |||||| || |||||||||| |  || |||  ||||||||||||||  ||||||||||| ||||    
50518879 taaaacagactccttcacga-taccaccactgtaaaaacgatatcta--acgatccatcgtcactactcacctccaaagaaaaacaccc 50518964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 236
Target Start/End: Original strand, 33143643 - 33143811
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatc 165  Q
    |||||||  |||||||| | ||||||||||||||| ||||||| |||||||  ||||||| | || || ||||||| |||||| || ||||||||||| |    
33143643 aatacaaccaaaaggcgtcatatataggcggaacacccgaaaa-aaacaccc-aaaaaactcccaagaggataacatccaccataaaacacgtcaccacc 33143740  T
166 taaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcac 236  Q
    ||||||  |||||| ||||| ||| ||||||  | |||||||||||||| | ||| |||||||||||||||    
33143741 taaaacaaactccttcacgaaaaccaccactgaacaaacgatatccaaccccatccgtcgtcactactcac 33143811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 14194317 - 14194209
Alignment:
70 acaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatctaa 168  Q
    ||||| |||||| | | ||||||||||||||||||||||||||||| | | |||||||||||||| ||  ||| ||||||||||||||||||||| ||||    
14194317 acaaacaaaaggtgccttatataggcggaacatccgaaaataaacatcct-aaaaacactcatgaggaccacacccaccaaaatacacgtcaccacctaa 14194219  T
169 aactgactcc 178  Q
    ||| ||||||    
14194218 aacagactcc 14194209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 245
Target Start/End: Complemental strand, 37123695 - 37123593
Alignment:
143 ccaccaaaatacacgtcaccatctaaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaa 242  Q
    |||||||||||||| ||||||| |||||  |||| || ||||| ||| |||||| || |||||||||||||||| | |||| ||||||||||||  ||||    
37123695 ccaccaaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccacctgttgtcactactcaccgccaa 37123596  T
243 aga 245  Q
    |||    
37123595 aga 37123593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 25594199 - 25594257
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaa 125  Q
    |||| |||||||| ||| ||||||||||||||||| |||||| ||||||||||||||||    
25594199 aataaaaataaaatgcgtcgtatataggcggaacacccgaaagtaaacaccataaaaaa 25594257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 4171134 - 4171077
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaa 124  Q
    |||||||| |||||||| ||||||||||||||||| | ||||||||||||| ||||||    
4171134 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 4171077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 14280240 - 14280289
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacac 116  Q
    ||||||||| ||||||| ||||||||||||||||| |||||| |||||||    
14280240 aatacaaattaaaggcgccgtatataggcggaacacccgaaagtaaacac 14280289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 25648073 - 25648016
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaa 124  Q
    |||||||| ||||||||  |||||||| ||||||| ||||||||||||||| ||||||    
25648073 aatacaaacaaaaggcgcagtatatagacggaacacccgaaaataaacaccctaaaaa 25648016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 14893318 - 14893263
Alignment:
69 tacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaa 124  Q
    |||||| ||||| || ||||||||||||||||| | ||||||||||||| ||||||    
14893318 tacaaacaaaagacgccgtatataggcggaacacctgaaaataaacaccctaaaaa 14893263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 48893062 - 48893156
Alignment:
85 cgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatctaaaactgactcct 179  Q
    |||||||| | |||||||||||||||||||| | | |||||||| | ||| || |||| ||||||||||||| ||||||| ||||||  |||||||    
48893062 cgtatataagaggaacatccgaaaataaaca-ctttaaaaacacccctgaagacaacacccaccaaaatacatgtcaccacctaaaagagactcct 48893156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 45354599 - 45354660
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacac 128  Q
    ||||||||| ||||| |  ||||| |||||||| ||||||||||||||| ||||||| ||||    
45354599 aatacaaattaaaggtgttgtatagaggcggaatatccgaaaataaacatcataaaagacac 45354660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 37998900 - 37998956
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaa 123  Q
    |||||||| |||| | | |||||||||||||||  |||||||||||||||| |||||    
37998900 aatacaaacaaaatgtgccgtatataggcggaatgtccgaaaataaacaccttaaaa 37998956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 85 - 249
Target Start/End: Original strand, 37770359 - 37770514
Alignment:
85 cgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatctaaaactgactcctacac 183  Q
    ||||||||||||||||| ||||||||||||||| | |||||||| ||||| |||| || |||||||||| |||||||||| ||||||| ||||||| |||    
37770359 cgtatataggcggaacacccgaaaataaacaccct-aaaaacac-catgaggataccacccaccaaaatccacgtcaccacctaaaacagactccttcac 37770456  T
184 gagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaaaaa 249  Q
    || ||| |||||||||        ||||||||| | | ||||||||||||| | ||||||||||||    
37770457 gaaaaccaccactata--------atccaacaccacccgtcgtcactactcgcccccaaagaaaaa 37770514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 4975135 - 4974985
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatc 165  Q
    ||||||||  ||||||| ||||||||||| ||||| ||||||||||||||| | |||||||  | ||| ||||||| |||||||| |||||  ||||| |    
4975135 aatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccaccacc 4975036  T
166 taaaactgactcctacacgagaacaaccactatataaacgatatccaacac 216  Q
    |||||| |||| || ||||| ||| |||||| || ||||||||||| ||||    
4975035 taaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcccacac 4974985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 4993043 - 4992893
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatc 165  Q
    ||||||||  ||||||| ||||||||||| ||||| ||||||||||||||| | |||||||  | ||| ||||||| |||||||| |||||  ||||| |    
4993043 aatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccaccacc 4992944  T
166 taaaactgactcctacacgagaacaaccactatataaacgatatccaacac 216  Q
    |||||| |||| || ||||| ||| |||||| || ||||||||||| ||||    
4992943 taaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcccacac 4992893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 34230591 - 34230410
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatc 165  Q
    |||||||| ||||| || ||||||||||||||||| |  |||||||||| | |||||| ||| | | |  | |||| |||||||||||||||||||||||    
34230591 aatacaaacaaaagacgccgtatataggcggaacaccaaaaaataaacatcgtaaaaa-caccccttagaacaacatccaccaaaatacacgtcaccatc 34230493  T
166 taaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaaaaa 249  Q
    | |||| ||||| | ||||| ||| ||||||||| |||||||||||||||  | | ||||  |||||||||  |||||||||||    
34230492 t-aaacagactcttccacgaaaacgaccactataaaaacgatatccaacaacacccgtcgcaactactcacctccaaagaaaaa 34230410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 4472333 - 4472276
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaa 124  Q
    ||||||||  ||||||| ||||||||| ||||||||||||||||||||||||||||||    
4472333 aatacaaactaaaggcgtcgtatatagacggaacatccgaaaataaacaccataaaaa 4472276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 211
Target Start/End: Original strand, 41113450 - 41113573
Alignment:
86 gtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataacaccaccaaaatacacgtcaccatctaaaactgactcctacacga 185  Q
    |||||||||||||||||||||||||||| ||| |||||||||| ||||| |  |   ||||||||||| |||| || | ||||||| ||||||| |||||    
41113450 gtatataggcggaacatccgaaaataaataccctaaaaaacacccatgagggca--cccaccaaaataaacgttactacctaaaacagactccttcacga 41113547  T
186 gaacaaccactatataaacgatatcc 211  Q
     ||| || | | || |||||||||||    
41113548 aaacgactattgtacaaacgatatcc 41113573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 22884805 - 22884866
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacac 128  Q
    ||||||||  ||||||| ||||||||||||||||| |||||||||||| ||||| |||||||    
22884805 aatacaaactaaaggcgtcgtatataggcggaacacccgaaaataaactccatacaaaacac 22884866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 12343127 - 12343060
Alignment:
147 caaaatacacgtcaccatctaaaactgactcctacacgagaacaaccactatataaacgatatccaac 214  Q
    ||||||||||||||||| ||||||| ||||||| ||||| ||| ||| || || ||||||||||||||    
12343127 caaaatacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatccaac 12343060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 13337640 - 13337583
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaa 124  Q
    |||||||| |||||||| |||||||||| |||||| | ||||||||||||| ||||||    
13337640 aatacaaacaaaaggcgtcgtatataggtggaacacctgaaaataaacaccctaaaaa 13337583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 7696351 - 7696248
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatc 165  Q
    |||||||| ||||||   ||||||||||||||||| || |||||||||||| | |||||||| |  || || |||| |||||||||||||| |||||| |    
7696351 aatacaaacaaaaggaaccgtatataggcggaacacccaaaaataaacacc-ttaaaaacacccccgaggacaacacccaccaaaatacacatcaccacc 7696253  T
166 taaaa 170  Q
    |||||    
7696252 taaaa 7696248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 27740378 - 27740319
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaac 126  Q
    ||||||||  ||||||| |||||||||| |||||| |||||||||||| ||||| |||||    
27740378 aatacaaactaaaggcgtcgtatataggtggaacacccgaaaataaactccatacaaaac 27740319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 29997345 - 29997287
Alignment:
57 tgaaattagaaatacaaataaaaggcgacgtatataggcggaacatccgaaaataaaca 115  Q
    |||||||  ||||| ||| |||||||  |||||||| ||||||||||||||||||||||    
29997345 tgaaattgaaaataaaaacaaaaggcaccgtatataagcggaacatccgaaaataaaca 29997287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 16952053 - 16952098
Alignment:
85 cgtatataggcggaacatccgaaaataaacaccataaaaaacactc 130  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||||    
16952053 cgtatataggcagaacatccaaaaataaacatcataaaagacactc 16952098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 17022718 - 17022763
Alignment:
85 cgtatataggcggaacatccgaaaataaacaccataaaaaacactc 130  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||||    
17022718 cgtatataggcagaacatccaaaaataaacatcataaaagacactc 17022763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 33788316 - 33788377
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacac 128  Q
    ||||||||  ||||||| |||||||| |||||||| |||||||||||  ||||| |||||||    
33788316 aatacaaactaaaggcgccgtatatatgcggaacacccgaaaataaaatccatacaaaacac 33788377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 44594068 - 44594012
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaa 123  Q
    |||||||| |||||||| ||| |||||  |||| |||||||||||||||||| ||||    
44594068 aatacaaacaaaaggcgtcgtgtatagatggaatatccgaaaataaacaccaaaaaa 44594012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 16954878 - 16954750
Alignment:
68 atacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataac-accaccaaaatacacgtcaccatct 166  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||  | |||||||| | ||| || ||| ||||| |||||||||||||||| ||    
16954878 atacaaataaaaggcaccgtatataggcggaacatccgaaaataaacacgct-aaaaacacccctgaagaaaacaaccacaaaaatacacgtcaccacct 16954780  T
167 aaaactgactcctacacgagaacaaccact 196  Q
    ||||| |||  || || || ||||||||||    
16954779 aaaacagacatcttcaagaaaacaaccact 16954750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 36674872 - 36674810
Alignment:
55 ggtgaaattagaaatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacacc 117  Q
    ||||||||| || ||||||| |||||||| ||||||||||||||| |||||||||||||||||    
36674872 ggtgaaattggagatacaaacaaaaggcgtcgtatataggcggaatatccgaaaataaacacc 36674810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 6492859 - 6492934
Alignment:
105 gaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatctaaaactgactcct 179  Q
    ||||||||||||||||||||||||  |||| || |||| |||||||||| |||||||||| ||||||| |||||||    
6492859 gaaaataaacaccataaaaaacacctatgaggacaacatccaccaaaattcacgtcaccacctaaaacagactcct 6492934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 196
Target Start/End: Original strand, 16828791 - 16828920
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataac-accaccaaaatacacgtcaccatc 165  Q
    |||||||| |||| ||| ||||||||||||||||| ||||||||||||| | | | ||| || | ||| || ||| ||||||||||||||| ||| ||||    
16828791 aatacaaacaaaatgcgccgtatataggcggaacacccgaaaataaacatcct-agaaatacccctgaagaaaacaaccaccaaaatacacatcatcatc 16828889  T
166 taaaactgactcctacacgagaacaaccact 196  Q
    |||||||| | ||| || || ||||||||||    
16828890 taaaactggccccttcaagaaaacaaccact 16828920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 28534195 - 28534240
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataa 112  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||    
28534195 aatacaaataaaaggcgccgtatataggcggaacacccgaaaataa 28534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 33719355 - 33719174
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatc 165  Q
    |||||||| ||| ||||  | ||||||||||||||| ||||| |||||||| | |||||||||||||| || |||| ||||||||||||   |||||  |    
33719355 aatacaaacaaacggcgctgaatataggcggaacat-cgaaagtaaacaccct-aaaaacactcatgaggacaacacccaccaaaatacctatcaccgcc 33719258  T
166 taaaactgactcctacac-gagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaaaaa 249  Q
    |||||| ||||||| |||  | ||| ||| || || ||| ||||||||||||||    |||||||||||||| ||||||||||||    
33719257 taaaaccgactccttcacaaaaaacgacctctgtaaaaatgatatccaacactactcatcgtcactactcac-cccaaagaaaaa 33719174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 3478729 - 3478683
Alignment:
77 aaaggcgacgtatataggcggaacatccgaaaataaacaccataaaa 123  Q
    ||||||| ||||||||||||||||| ||||||||||||||| |||||    
3478729 aaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaa 3478683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 247
Target Start/End: Original strand, 6716427 - 6716608
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacacc--ataaaaaacactcatgatgataacacc-accaaaatacacgtcacca 163  Q
    ||||||||| ||||| | ||||||||  ||||||| | |||||||||||||  | |||||||||||| || ||||||||| ||| || |||| | |||||    
6716427 aatacaaattaaaggggccgtatataaccggaacacctgaaaataaacaccctaaaaaaaacactcacgaggataacaccaacccaagtacatgacacca 6716526  T
164 tctaaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaaa 247  Q
     |||||||  |||||| ||||| ||| |||||| || ||||| ||||  |||| | |  | |||||||||||| ||||| ||||    
6716527 cctaaaac--actccttcacgaaaacgaccactgtaaaaacggtatctcacaccacccattgtcactactcacccccaacgaaa 6716608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 23983634 - 23983578
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaa 123  Q
    ||||||||| ||||||  |||||||||||||| ||||| |||||||||| |||||||    
23983634 aatacaaattaaaggcatcgtatataggcggagcatccaaaaataaacatcataaaa 23983578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 26385857 - 26385912
Alignment:
76 aaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcat 132  Q
    ||||| || ||||||||||||||||| || ||||||||||||||||||| |||||||    
26385857 aaaagacgccgtatataggcggaacaccc-aaaataaacaccataaaaatcactcat 26385912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 2331792 - 2331832
Alignment:
85 cgtatataggcggaacatccgaaaataaacaccataaaaaac 126  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
2331792 cgtatatagacggaacatcc-aaaataaacaccataaaaaac 2331832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 2339325 - 2339365
Alignment:
85 cgtatataggcggaacatccgaaaataaacaccataaaaaac 126  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
2339325 cgtatatagacggaacatcc-aaaataaacaccataaaaaac 2339365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 8745410 - 8745357
Alignment:
201 aaacgatatccaacactatctgtcgtcactactcacacccaaagaaaaagaccc 254  Q
    |||| ||||||||||| |||  |||||||||||||| |||||||||||| ||||    
8745410 aaacaatatccaacaccatccttcgtcactactcacccccaaagaaaaacaccc 8745357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 42532950 - 42533007
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaa 124  Q
    |||||||  |||||||| ||||||||||||||||| | | ||||||||||| ||||||    
42532950 aatacaaccaaaaggcgccgtatataggcggaacacctggaaataaacaccctaaaaa 42533007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 24324520 - 24324607
Alignment:
98 aacatccgaaaataaacaccataaaaaacactcatgatgataacac-caccaaaatacacgtcaccatctaaaactgactcctacacga 185  Q
    |||| ||||||||||||||  |||||| ||| | ||| || ||||| ||||||||||||||||||||  |||||| ||||||| |||||    
24324520 aacacccgaaaataaacactctaaaaa-cacccttgaggacaacactcaccaaaatacacgtcaccacttaaaacagactccttcacga 24324607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 25438730 - 25438690
Alignment:
85 cgtatataggcggaacatccgaaaa-taaacaccataaaaa 124  Q
    ||||||||||||||||| ||||||| |||||||||||||||    
25438730 cgtatataggcggaacacccgaaaagtaaacaccataaaaa 25438690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 246
Target Start/End: Complemental strand, 58518 - 58339
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataacacca-ccaaaatacacgtcaccatc 165  Q
    |||| ||| |||||||| ||||||||||  ||||| || |||||||| ||| |||||| ||| |||||  | | || || ||||| ||||| |||||| |    
58518 aatagaaacaaaaggcgccgtatataggtagaacacccaaaaataaataccctaaaaa-cacccatgagaacaccatcagccaaagtacacatcaccacc 58420  T
166 taaaactgactcctacacgagaacaaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaa 246  Q
     ||||| ||||||| ||||| ||| |||| | || ||  |||||||||||||| | |||||||||||||||||||||||||    
58419 aaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcgtcactactcacacccaaagaa 58339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 67 - 177
Target Start/End: Original strand, 15120293 - 15120404
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacactcatgatgataaca-ccaccaaaatacacgtcaccatc 165  Q
    ||||||||  |||| |||||||| ||||| ||||||| || |||||||||| |||||||||  ||||| || |||| |||||||||||||| |||||| |    
15120293 aatacaaactaaagacgacgtatgtaggcagaacatctgacaataaacaccctaaaaaacatccatgaggacaacatccaccaaaatacacatcaccacc 15120392  T
166 taaaactgactc 177  Q
    |||||| |||||    
15120393 taaaacagactc 15120404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 3880411 - 3880469
Alignment:
191 accactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaaaaa 249  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||| ||| ||||||||    
3880411 accactataaaaacgatatccaacaccatctgtcgtcactactcaccccctaagaaaaa 3880469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 17278163 - 17278214
Alignment:
77 aaaggcgacgtatataggcggaacatccgaaaataaacaccataaaaaacac 128  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||| ||||    
17278163 aaaggcgtcgtatataggcggaacacccgaaaataaacatcataaaagacac 17278214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 20500323 - 20500278
Alignment:
86 gtatataggcggaacatccgaaaataaacaccataaaaaacactcat 132  Q
    |||||||||||||||| || |||||||||||||||||| ||||||||    
20500323 gtatataggcggaacaccc-aaaataaacaccataaaagacactcat 20500278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 20701614 - 20701674
Alignment:
189 caaccactatataaacgatatccaacactatctgtcgtcactactcacacccaaagaaaaa 249  Q
    |||||||| || ||||||||||||| |||| |  |||||||||||||| |||||| |||||    
20701614 caaccactgtaaaaacgatatccaatactacccatcgtcactactcacccccaaaaaaaaa 20701674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 686 - 742
Alignment:
67 aatacaaataaaaggcgacgtatataggcggaacatccgaaaataaacaccataaaa 123  Q
    ||||||||  |||| || |||||||| | |||||| |||||||||||||||||||||    
686 aatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaa 742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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