View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350_low_27 (Length: 424)
Name: NF1350_low_27
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 338
Target Start/End: Original strand, 47933299 - 47933621
Alignment:
| Q |
14 |
agaggaagaaaaattacagggtttgaatcatgtatttttctgatggtcattacttccgcgtatattctgtaggatcagtttgaaaaattgaccttttttc |
113 |
Q |
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| T |
47933299 |
agaggaagaaaaattacagggtttgaatcatgtatttttctgatggtcattacttc-gcgtatattctgtaggatcagtttgaaaaattgaccttttttc |
47933397 |
T |
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| Q |
114 |
cgaaaattccaagggaatgaaaccaagtggccattgcctccatgagatgatcttcttcttcgttgaacaagtctaagatagaatcgtcttggcaatcaag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47933398 |
cgaaaattccaagggaatgaaaccaagtggccattgcctccatgagatgatctgcttcttcgttgaacaagtctaagatagaatcgtctaggcaatcaag |
47933497 |
T |
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| Q |
214 |
ttgactatcaaattcaccttattttaatgatgtgaggtcaggacatgagaagctataatatattatagtttggaagtgcctcaagttcttgcataccata |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
47933498 |
ttgactatcaaattcaccttattttaatgatgtgaggtcaggacatgagaagctataatatattatagttcggaagtgcctcaagttcttgcatacca-a |
47933596 |
T |
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| Q |
314 |
ttgtttcaaattctttcacattcct |
338 |
Q |
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||||||||||||||||||||||||| |
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| T |
47933597 |
ttgtttcaaattctttcacattcct |
47933621 |
T |
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