View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1350_low_30 (Length: 365)

Name: NF1350_low_30
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1350_low_30
NF1350_low_30
[»] chr8 (11 HSPs)
chr8 (102-290)||(38125467-38125666)
chr8 (223-284)||(15196515-15196576)
chr8 (223-276)||(24802570-24802623)
chr8 (225-283)||(1673900-1673958)
chr8 (223-283)||(36430424-36430484)
chr8 (225-284)||(6438208-6438267)
chr8 (223-284)||(13481321-13481382)
chr8 (223-261)||(20170017-20170055)
chr8 (254-284)||(43980441-43980471)
chr8 (251-284)||(4410795-4410828)
chr8 (256-284)||(36430472-36430500)
[»] chr4 (13 HSPs)
chr4 (223-284)||(32564844-32564905)
chr4 (223-273)||(4473073-4473123)
chr4 (223-284)||(42576932-42576993)
chr4 (228-284)||(9786315-9786371)
chr4 (223-284)||(7209057-7209118)
chr4 (223-284)||(44302390-44302451)
chr4 (247-283)||(50438172-50438208)
chr4 (251-285)||(26203088-26203122)
chr4 (251-284)||(7209101-7209134)
chr4 (254-283)||(12624914-12624943)
chr4 (223-284)||(31836604-31836665)
chr4 (251-283)||(32564829-32564861)
chr4 (248-288)||(43387727-43387766)
[»] chr2 (18 HSPs)
chr2 (223-284)||(12457017-12457078)
chr2 (223-284)||(33810616-33810677)
chr2 (223-283)||(9154150-9154210)
chr2 (226-286)||(12890262-12890322)
chr2 (223-285)||(39028777-39028839)
chr2 (223-280)||(14949237-14949294)
chr2 (223-283)||(38985126-38985186)
chr2 (219-282)||(16152538-16152601)
chr2 (222-283)||(36887335-36887396)
chr2 (223-285)||(19246496-19246559)
chr2 (242-284)||(19477208-19477250)
chr2 (223-268)||(43939452-43939497)
chr2 (223-267)||(21924851-21924895)
chr2 (251-286)||(12457061-12457096)
chr2 (250-283)||(9154109-9154142)
chr2 (254-283)||(17663842-17663871)
chr2 (254-283)||(20362200-20362229)
chr2 (225-285)||(41877553-41877613)
[»] scaffold0001 (1 HSPs)
scaffold0001 (223-282)||(504606-504665)
[»] chr1 (11 HSPs)
chr1 (223-284)||(46836392-46836453)
chr1 (223-282)||(7255149-7255208)
chr1 (228-284)||(6380150-6380206)
chr1 (223-284)||(11248642-11248703)
chr1 (223-283)||(31922856-31922916)
chr1 (223-276)||(6951052-6951105)
chr1 (223-283)||(42966362-42966422)
chr1 (226-286)||(43325687-43325747)
chr1 (254-285)||(15512636-15512667)
chr1 (254-285)||(28948819-28948850)
chr1 (250-283)||(12844000-12844033)
[»] chr7 (13 HSPs)
chr7 (223-283)||(28885497-28885557)
chr7 (223-285)||(31448379-31448441)
chr7 (223-283)||(19989094-19989154)
chr7 (223-285)||(11575456-11575518)
chr7 (223-283)||(32553683-32553743)
chr7 (223-271)||(5516317-5516365)
chr7 (223-287)||(9077521-9077585)
chr7 (225-281)||(25648686-25648742)
chr7 (223-261)||(44391727-44391765)
chr7 (223-284)||(1287132-1287193)
chr7 (223-256)||(4024735-4024768)
chr7 (250-283)||(25098244-25098277)
chr7 (256-284)||(18121901-18121929)
[»] chr3 (9 HSPs)
chr3 (223-283)||(42380566-42380626)
chr3 (223-283)||(42409280-42409340)
chr3 (223-285)||(33896651-33896713)
chr3 (223-283)||(42380737-42380797)
chr3 (223-283)||(42409451-42409511)
chr3 (223-284)||(25353855-25353916)
chr3 (223-278)||(23505574-23505629)
chr3 (251-286)||(42380548-42380583)
chr3 (251-286)||(42409262-42409297)
[»] chr5 (11 HSPs)
chr5 (223-285)||(8564909-8564971)
chr5 (223-284)||(16725020-16725081)
chr5 (223-283)||(9475083-9475143)
chr5 (229-283)||(30264571-30264625)
chr5 (223-276)||(21743029-21743082)
chr5 (223-284)||(32636240-32636301)
chr5 (223-285)||(3103150-3103212)
chr5 (243-286)||(8911748-8911791)
chr5 (225-268)||(27788487-27788530)
chr5 (254-285)||(39690341-39690372)
chr5 (225-263)||(41328615-41328653)
[»] scaffold0009 (2 HSPs)
scaffold0009 (223-284)||(143350-143411)
scaffold0009 (251-283)||(143394-143426)
[»] scaffold0064 (2 HSPs)
scaffold0064 (223-283)||(59415-59475)
scaffold0064 (223-284)||(22372-22433)
[»] chr6 (5 HSPs)
chr6 (223-282)||(30416938-30416997)
chr6 (223-285)||(1520915-1520977)
chr6 (227-276)||(32006915-32006964)
chr6 (254-284)||(19839149-19839179)
chr6 (225-277)||(32828873-32828925)
[»] scaffold0263 (2 HSPs)
scaffold0263 (223-273)||(13388-13437)
scaffold0263 (255-284)||(13372-13401)
[»] scaffold0002 (2 HSPs)
scaffold0002 (223-273)||(92016-92065)
scaffold0002 (255-284)||(92000-92029)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 102 - 290
Target Start/End: Original strand, 38125467 - 38125666
Alignment:
Q  102 caaactagttaaattcatcattattaaccttatcccagtggcttgactaattcatcaaatttacaacactatactgtttgacgaccgagtgatatttaag 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38125467 caaactagttaaattcatcattattaaccttatcccagtggcttgacttattcatcaaatttacaacactatactgtttgacgaccgagtgatatttaag 38125566  T
Q  202 atgaatgaggttttgtt-----------tccatatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtataatcta 290  Q
    |||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38125567 atgaatgaggttttgtttactccctccgtccatatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtataatcta 38125666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 15196515 - 15196576
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    |||||||||||| ||||| | ||||||||||||||||||| |||||||||||||||||||||    
T  15196515 tatatgtaagcatctttttcttctaataaaagggtgcttagatatagggacggagggagtat 15196576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 24802570 - 24802623
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacgga 276  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  24802570 tatatgtaagcaccttttgcatctaataaaagggtgcttagatatagggacgga 24802623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 1673958 - 1673900
Alignment:
Q  225 tatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    |||||||||||||||||| ||| ||||||||||||||| ||| | ||||||||||||||    
T  1673958 tatgtaagcaccttttgcatctgataaaagggtgcttagatacaaggacggagggagta 1673900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 36430484 - 36430424
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    |||||||||||||    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  36430484 tatatgtaagcacaaggtgcctctaataaaagggtgcttaaatatagggacggaggaagta 36430424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 6438267 - 6438208
Alignment:
Q  225 tatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    |||||||||||| |||  |||||||||||||||||||||||||||| | |||| ||||||    
T  6438267 tatgtaagcaccatttatctctaataaaagggtgcttacatataggaatggagagagtat 6438208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 13481321 - 13481382
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    |||||||||||||| ||| |||||||||||| || | ||| ||||| |||||||||||||||    
T  13481321 tatatgtaagcaccatttacctctaataaaatggagtttaaatataaggacggagggagtat 13481382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 20170017 - 20170055
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgctt 261  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  20170017 tatatgtaagcactttttgcctctaataaaatggtgctt 20170055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Complemental strand, 43980471 - 43980441
Alignment:
Q  254 gggtgcttacatatagggacggagggagtat 284  Q
    |||||||||||||||||||||||||||||||    
T  43980471 gggtgcttacatatagggacggagggagtat 43980441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 4410828 - 4410795
Alignment:
Q  251 aaagggtgcttacatatagggacggagggagtat 284  Q
    |||||||||||| |||||||||||||||||||||    
T  4410828 aaagggtgcttatatatagggacggagggagtat 4410795  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 284
Target Start/End: Original strand, 36430472 - 36430500
Alignment:
Q  256 gtgcttacatatagggacggagggagtat 284  Q
    |||||||||||||||||||||||||||||    
T  36430472 gtgcttacatatagggacggagggagtat 36430500  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 32564844 - 32564905
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  32564844 tatatgtaagcactctttgcctctaataaaagggtgcttacatatagggacggagggagtat 32564905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 4473073 - 4473123
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggac 273  Q
    |||||||||||||  |||||||||||||||| |||||||||||||||||||    
T  4473073 tatatgtaagcactctttgcctctaataaaaaggtgcttacatatagggac 4473123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 42576932 - 42576993
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    ||||| |||||||  |||||||||||||||| |||||||| ||||||| |||||||||||||    
T  42576932 tatatataagcacaatttgcctctaataaaatggtgcttagatataggaacggagggagtat 42576993  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 9786315 - 9786371
Alignment:
Q  228 gtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    ||||||||  ||||||||||||||||| |||||||||||| | ||||||||||||||    
T  9786315 gtaagcactctttgcctctaataaaagagtgcttacatatcgagacggagggagtat 9786371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 7209118 - 7209057
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    |||||||||||||  |||| |||||||||||  ||||||| |||||||||| ||||||||||    
T  7209118 tatatgtaagcactctttgtctctaataaaaaagtgcttagatatagggactgagggagtat 7209057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 44302390 - 44302451
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    ||||| |||||| ||||| ||||||||||||||||||||| ||||| | ||||||| |||||    
T  44302390 tatatctaagcatctttttcctctaataaaagggtgcttaaatataagaacggaggaagtat 44302451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 50438208 - 50438172
Alignment:
Q  247 aataaaagggtgcttacatatagggacggagggagta 283  Q
    |||||||||||| ||||||||||||||||||||||||    
T  50438208 aataaaagggtgattacatatagggacggagggagta 50438172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 285
Target Start/End: Complemental strand, 26203122 - 26203088
Alignment:
Q  251 aaagggtgcttacatatagggacggagggagtata 285  Q
    |||||| ||||||||||||||||||||||||||||    
T  26203122 aaagggggcttacatatagggacggagggagtata 26203088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 7209101 - 7209134
Alignment:
Q  251 aaagggtgcttacatatagggacggagggagtat 284  Q
    |||| |||||||||||||||||||||||||||||    
T  7209101 aaagagtgcttacatatagggacggagggagtat 7209134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 283
Target Start/End: Original strand, 12624914 - 12624943
Alignment:
Q  254 gggtgcttacatatagggacggagggagta 283  Q
    ||||||||||||||||||||||||||||||    
T  12624914 gggtgcttacatatagggacggagggagta 12624943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 31836665 - 31836604
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    ||||| |||||| | |||||||||||||||| | || ||| |||||| ||||||||||||||    
T  31836665 tatatataagcaacatttgcctctaataaaatgatgtttatatatagagacggagggagtat 31836604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 32564861 - 32564829
Alignment:
Q  251 aaagggtgcttacatatagggacggagggagta 283  Q
    |||| ||||||||||||||||||||||||||||    
T  32564861 aaagagtgcttacatatagggacggagggagta 32564829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 43387766 - 43387727
Alignment:
Q  248 ataaaagggtgcttacatatagggacggagggagtataatc 288  Q
    |||||||||| |||| |||||||||||||||||||||||||    
T  43387766 ataaaagggt-cttatatatagggacggagggagtataatc 43387727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 12457078 - 12457017
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  12457078 tatatgtaagcaccctttgcctctaataaaagggtgcttagatatagggacggagggagtat 12457017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 33810677 - 33810616
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||||||||| |||||||||    
T  33810677 tatatgtaagcacaattttcctctaataaaagggtgcttacatatagggacgaagggagtat 33810616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 9154150 - 9154210
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    ||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||||||||||    
T  9154150 tatatgtaaccacccttttcctctaataaaagggtgcttagatatagggacggagggagta 9154210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 12890322 - 12890262
Alignment:
Q  226 atgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtataa 286  Q
    ||||||||||| ||| |||||||||||||| |||||| |||||||||||||||||||||||    
T  12890322 atgtaagcaccattttcctctaataaaaggatgcttagatatagggacggagggagtataa 12890262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 39028777 - 39028839
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtata 285  Q
    |||||||||||||| ||||| ||||| ||||||||||||  ||||||||||||||||||||||    
T  39028777 tatatgtaagcaccatttgcatctaacaaaagggtgctttgatatagggacggagggagtata 39028839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 14949294 - 14949237
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggaggga 280  Q
    |||||||||||||| ||||||||||||||||| ||||||| || ||||||||||||||    
T  14949294 tatatgtaagcaccatttgcctctaataaaagagtgcttagatgtagggacggaggga 14949237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 38985186 - 38985126
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    ||||| |||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  38985186 tatatataagcaccatttccctctaataaaagagtgcttatatatagggacggagggagta 38985126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 16152601 - 16152538
Alignment:
Q  219 tccatatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagt 282  Q
    ||||||||| |||||||| |||| |||||||||||||||||||| ||| ||||||| |||||||    
T  16152601 tccatatatataagcaccctttgtctctaataaaagggtgcttatatagagggacgaagggagt 16152538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 36887335 - 36887396
Alignment:
Q  222 atatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    |||||||||||||  |||| ||| |||||||| |||| ||||||||||||||||||||||||    
T  36887335 atatatgtaagcatttttttcctataataaaatggtgtttacatatagggacggagggagta 36887396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 19246496 - 19246559
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagg-gtgcttacatatagggacggagggagtata 285  Q
    |||||||||||| | ||| |||||||||||||| ||||||| ||||| ||||||||||||||||    
T  19246496 tatatgtaagcatcattttcctctaataaaaggtgtgcttagatataaggacggagggagtata 19246559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 19477208 - 19477250
Alignment:
Q  242 cctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  19477208 cctctaataaaagggtgcttagatatagggacggatggagtat 19477250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 43939452 - 43939497
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatata 268  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||    
T  43939452 tatatgtaagcactatttgcctctaataaaagggtgcttagatata 43939497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 21924851 - 21924895
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatat 267  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||||    
T  21924851 tatatataagcaccttttacctctaataaaagggtgcttaaatat 21924895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 12457061 - 12457096
Alignment:
Q  251 aaagggtgcttacatatagggacggagggagtataa 286  Q
    ||||||||||||||||||||||| ||||||||||||    
T  12457061 aaagggtgcttacatatagggacagagggagtataa 12457096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 9154142 - 9154109
Alignment:
Q  250 aaaagggtgcttacatatagggacggagggagta 283  Q
    ||||||||| ||||||||||||||||||||||||    
T  9154142 aaaagggtggttacatatagggacggagggagta 9154109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 283
Target Start/End: Original strand, 17663842 - 17663871
Alignment:
Q  254 gggtgcttacatatagggacggagggagta 283  Q
    ||||||||||||||||||||||||||||||    
T  17663842 gggtgcttacatatagggacggagggagta 17663871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 283
Target Start/End: Original strand, 20362200 - 20362229
Alignment:
Q  254 gggtgcttacatatagggacggagggagta 283  Q
    ||||||||||||||||||||||||||||||    
T  20362200 gggtgcttacatatagggacggagggagta 20362229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 41877613 - 41877553
Alignment:
Q  225 tatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtata 285  Q
    |||||||||||  ||| | ||||||||||| ||||||| ||||||||||  ||||||||||    
T  41877613 tatgtaagcactcttttcttctaataaaagtgtgcttagatatagggacaaagggagtata 41877553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 504606 - 504665
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagt 282  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  504606 tatatgtaagcaccttttgtctctaataaaaaggtgcttacatatagggacggagggagt 504665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 46836392 - 46836453
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  46836392 tatatgtaagcacattttgcctctaataaaagggtgcttagatatagggacggaaggagtat 46836453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 7255149 - 7255208
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagt 282  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||    
T  7255149 tatatgtaagcacattttccctctaataaaagggtgcttacatataggaacggagggagt 7255208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 6380206 - 6380150
Alignment:
Q  228 gtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||    
T  6380206 gtaagcaccttttgtctctaataaaagggtgcttagatatagggatggagggagtat 6380150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 11248703 - 11248642
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    |||||||||||||| ||||||||||||||||  ||||||| ||||||||||||||| |||||    
T  11248703 tatatgtaagcaccatttgcctctaataaaatagtgcttagatatagggacggaggaagtat 11248642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 31922856 - 31922916
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    ||||||||| || ||||||||| ||||||||||||||||| |||||||||||||| |||||    
T  31922856 tatatgtaaacatcttttgcctttaataaaagggtgcttagatatagggacggagagagta 31922916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 6951052 - 6951105
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacgga 276  Q
    |||||||||||||  ||||||||||||||||||||||||| ||||| |||||||    
T  6951052 tatatgtaagcacactttgcctctaataaaagggtgcttagatataaggacgga 6951105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 42966362 - 42966422
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    ||||| |||||||||||||| ||| ||||||| ||||||| |||||||||| |||||||||    
T  42966362 tatatataagcaccttttgcatctgataaaagagtgcttagatatagggacagagggagta 42966422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 43325687 - 43325747
Alignment:
Q  226 atgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtataa 286  Q
    ||||||||| | |||  |||||||||||| ||||||||||||||||||||| | |||||||    
T  43325687 atgtaagcatcatttttctctaataaaagagtgcttacatatagggacggatgaagtataa 43325747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 285
Target Start/End: Complemental strand, 15512667 - 15512636
Alignment:
Q  254 gggtgcttacatatagggacggagggagtata 285  Q
    ||||||||||||||||||||||||||||||||    
T  15512667 gggtgcttacatatagggacggagggagtata 15512636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 285
Target Start/End: Complemental strand, 28948850 - 28948819
Alignment:
Q  254 gggtgcttacatatagggacggagggagtata 285  Q
    ||||||||||||||||||||||||||||||||    
T  28948850 gggtgcttacatatagggacggagggagtata 28948819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 12844033 - 12844000
Alignment:
Q  250 aaaagggtgcttacatatagggacggagggagta 283  Q
    ||||||||| ||||||||||||||||||||||||    
T  12844033 aaaagggtggttacatatagggacggagggagta 12844000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 28885497 - 28885557
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  28885497 tatatgtaagcaccattttcctctaataaaagggtgcttacatataaggacggagggagta 28885557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 31448379 - 31448441
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtata 285  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||    
T  31448379 tatatgtaagcaccctttgcatctaataaaagggtgcttagatatagggacggagagagtata 31448441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 19989094 - 19989154
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    |||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| ||||    
T  19989094 tatatgtaagcaccatttgcctctaataaaatggtgcttagatatagggacggaggaagta 19989154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 11575456 - 11575518
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtata 285  Q
    ||||||||||||| ||||||||||||||||| | |||||| |||||||||||||| |||||||    
T  11575456 tatatgtaagcacattttgcctctaataaaatgatgcttagatatagggacggagagagtata 11575518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 32553743 - 32553683
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    ||||||||| || | |||| |||||||||||||||| ||||||||||||||||||||||||    
T  32553743 tatatgtaaacatcatttgtctctaataaaagggtgtttacatatagggacggagggagta 32553683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 5516317 - 5516365
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatataggg 271  Q
    |||||||||||||| ||| ||| |||||||| |||||||||||||||||    
T  5516317 tatatgtaagcaccatttacctttaataaaatggtgcttacatataggg 5516365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 9077585 - 9077521
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtataat 287  Q
    ||||||||| |||  ||| ||||||||||||| ||||||| ||||| |||||||| |||||||||    
T  9077585 tatatgtaaacactctttccctctaataaaagagtgcttaaatataaggacggagagagtataat 9077521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 25648742 - 25648686
Alignment:
Q  225 tatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggag 281  Q
    ||||||| || || |||||||| ||||||||||||||| |||||| |||||||||||    
T  25648742 tatgtaaacatctattgcctctgataaaagggtgcttatatatagagacggagggag 25648686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 44391727 - 44391765
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgctt 261  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  44391727 tatatgtaagcactttttgcctctaataaaatggtgctt 44391765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 1287132 - 1287193
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    |||||||| ||||| |||| || ||||||||| ||||||| ||||||||||| || ||||||    
T  1287132 tatatgtaggcaccatttgtctttaataaaagagtgcttagatatagggacgaagagagtat 1287193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 4024768 - 4024735
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaaggg 256  Q
    |||||||||||||||||||||| |||||||||||    
T  4024768 tatatgtaagcaccttttgcctataataaaaggg 4024735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 25098277 - 25098244
Alignment:
Q  250 aaaagggtgcttacatatagggacggagggagta 283  Q
    ||||||||| ||||||||||||||||||||||||    
T  25098277 aaaagggtggttacatatagggacggagggagta 25098244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 284
Target Start/End: Complemental strand, 18121929 - 18121901
Alignment:
Q  256 gtgcttacatatagggacggagggagtat 284  Q
    |||||||||||||||||||||||||||||    
T  18121929 gtgcttacatatagggacggagggagtat 18121901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 42380566 - 42380626
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    |||||||||||||| ||||||||||||||||||||  ||| ||||||||||||||||||||    
T  42380566 tatatgtaagcaccctttgcctctaataaaagggtttttagatatagggacggagggagta 42380626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 42409280 - 42409340
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    |||||||||||||| ||||||||||||||||||||  ||| ||||||||||||||||||||    
T  42409280 tatatgtaagcaccctttgcctctaataaaagggtttttagatatagggacggagggagta 42409340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 33896713 - 33896651
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtata 285  Q
    ||||||||| |||| |||||||||||| |||||||||||| ||||||||||||| | ||||||    
T  33896713 tatatgtaaacaccatttgcctctaatgaaagggtgcttatatatagggacggaagaagtata 33896651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 42380737 - 42380797
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    |||||||||||| | ||||||||||||||||||||  ||| |||||||||| |||||||||    
T  42380737 tatatgtaagcatcctttgcctctaataaaagggttattagatatagggacagagggagta 42380797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 42409451 - 42409511
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    |||||||||||| | ||||||||||||||||||||  ||| |||||||||| |||||||||    
T  42409451 tatatgtaagcatcctttgcctctaataaaagggttattagatatagggacagagggagta 42409511  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 25353916 - 25353855
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    ||||| |||||||| |||| |||||||||||||||||||| |||||| || | |||||||||    
T  25353916 tatatataagcaccgtttgtctctaataaaagggtgcttatatatagagatgaagggagtat 25353855  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 23505629 - 23505574
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagg 278  Q
    |||| ||||||||| ||||||| ||||||||||||| ||| |||||| ||||||||    
T  23505629 tatacgtaagcaccctttgcctttaataaaagggtgtttagatatagagacggagg 23505574  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 286
Target Start/End: Complemental strand, 42380583 - 42380548
Alignment:
Q  251 aaagggtgcttacatatagggacggagggagtataa 286  Q
    |||||||||||||||||||||||||| |||||||||    
T  42380583 aaagggtgcttacatatagggacggatggagtataa 42380548  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 286
Target Start/End: Complemental strand, 42409297 - 42409262
Alignment:
Q  251 aaagggtgcttacatatagggacggagggagtataa 286  Q
    |||||||||||||||||||||||||| |||||||||    
T  42409297 aaagggtgcttacatatagggacggatggagtataa 42409262  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 8564909 - 8564971
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtata 285  Q
    ||||||||||||  |||| | |||||||||| |||||||||||||||||||||||||||||||    
T  8564909 tatatgtaagcatttttttcttctaataaaaaggtgcttacatatagggacggagggagtata 8564971  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 16725081 - 16725020
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    |||||||||||| | |||||||||||||||||||||||||||||||  |||| |||||||||    
T  16725081 tatatgtaagcatcatttgcctctaataaaagggtgcttacatataaagacgaagggagtat 16725020  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 9475143 - 9475083
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||||| |||| |||||||||    
T  9475143 tatatgtaagcaccttttgcctcgaataaaatggtgcttatatataaggacagagggagta 9475083  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 30264571 - 30264625
Alignment:
Q  229 taagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    |||||| | ||||||||||||||||| ||||||| ||||||||||||||||||||    
T  30264571 taagcatcatttgcctctaataaaagagtgcttagatatagggacggagggagta 30264625  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 21743029 - 21743082
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacgga 276  Q
    |||||||||||||  ||||||||||||||||| ||||||| |||||||||||||    
T  21743029 tatatgtaagcactctttgcctctaataaaagagtgcttagatatagggacgga 21743082  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 32636240 - 32636301
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    |||||||||  || |||||||||||||||||||||| ||||||||||| |||||| ||||||    
T  32636240 tatatgtaaatactttttgcctctaataaaagggtgtttacatataggaacggagagagtat 32636301  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 3103212 - 3103150
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtata 285  Q
    ||||| |||||||| ||| ||||||||||||||||| ||| ||||||| ||||| ||||||||    
T  3103212 tatatataagcaccctttacctctaataaaagggtgtttatatataggaacggatggagtata 3103150  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 8911791 - 8911748
Alignment:
Q  243 ctctaataaaagggtgcttacatatagggacggagggagtataa 286  Q
    |||||||||||||||||||||||||| ||| ||| |||||||||    
T  8911791 ctctaataaaagggtgcttacatataaggatggaaggagtataa 8911748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 27788530 - 27788487
Alignment:
Q  225 tatgtaagcaccttttgcctctaataaaagggtgcttacatata 268  Q
    |||||||| ||||||||| ||||||||||||||||||| |||||    
T  27788530 tatgtaagtaccttttgcatctaataaaagggtgcttagatata 27788487  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 285
Target Start/End: Complemental strand, 39690372 - 39690341
Alignment:
Q  254 gggtgcttacatatagggacggagggagtata 285  Q
    ||||||||||||||||||||||||||||||||    
T  39690372 gggtgcttacatatagggacggagggagtata 39690341  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 41328653 - 41328615
Alignment:
Q  225 tatgtaagcaccttttgcctctaataaaagggtgcttac 263  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  41328653 tatgtaagcaccctttccctctaataaaagggtgcttac 41328615  T

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Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 143411 - 143350
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    |||||||||||| | ||||||||||||||||||||| |||||||||||||| |||| |||||    
T  143411 tatatgtaagcatcctttgcctctaataaaagggtgtttacatatagggacagaggaagtat 143350  T

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Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 143394 - 143426
Alignment:
Q  251 aaagggtgcttacatatagggacggagggagta 283  Q
    ||||| |||||||||||||||||||||||||||    
T  143394 aaaggatgcttacatatagggacggagggagta 143426  T

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Target: scaffold0064 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 59415 - 59475
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 283  Q
    ||||| |||||||  ||| ||||||||||||||||||||||||||||||| ||||||||||    
T  59415 tatatataagcacaatttccctctaataaaagggtgcttacatatagggatggagggagta 59475  T

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Target: scaffold0064; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 22433 - 22372
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 284  Q
    |||| |||||||||||| || |||||||||| |||| ||| ||||||| |||||||||||||    
T  22433 tatacgtaagcacctttagcatctaataaaatggtgtttatatataggaacggagggagtat 22372  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 30416938 - 30416997
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagt 282  Q
    |||||||||| ||  |||||||||||||||||| ||||||||||||||| ||||||||||    
T  30416938 tatatgtaagaactctttgcctctaataaaaggatgcttacatataggggcggagggagt 30416997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 1520915 - 1520977
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtata 285  Q
    ||||| |||||||  ||||||||||||||||||||||||| ||||| ||| |||| |||||||    
T  1520915 tatatttaagcacactttgcctctaataaaagggtgcttagatataaggatggagagagtata 1520977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 32006964 - 32006915
Alignment:
Q  227 tgtaagcaccttttgcctctaataaaagggtgcttacatatagggacgga 276  Q
    |||||||||| ||||| |||||||||||||| |||| |||||||||||||    
T  32006964 tgtaagcaccgtttgcatctaataaaagggtacttagatatagggacgga 32006915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Original strand, 19839149 - 19839179
Alignment:
Q  254 gggtgcttacatatagggacggagggagtat 284  Q
    |||||||||||||||||||||||||||||||    
T  19839149 gggtgcttacatatagggacggagggagtat 19839179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 32828873 - 32828925
Alignment:
Q  225 tatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggag 277  Q
    |||||||||||| ||||| |||||||||||| || ||| |||||| |||||||    
T  32828873 tatgtaagcaccatttgcatctaataaaaggatgtttagatatagcgacggag 32828925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 13388 - 13437
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggac 273  Q
    |||||||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  13388 tatatgtaagcaccttttgcatctaatagaagggtgcttaca-atagggac 13437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Complemental strand, 13401 - 13372
Alignment:
Q  255 ggtgcttacatatagggacggagggagtat 284  Q
    ||||||||||||||||||||||||||||||    
T  13401 ggtgcttacatatagggacggagggagtat 13372  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 92016 - 92065
Alignment:
Q  223 tatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggac 273  Q
    |||||||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  92016 tatatgtaagcaccttttgcatctaatagaagggtgcttaca-atagggac 92065  T

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Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Complemental strand, 92029 - 92000
Alignment:
Q  255 ggtgcttacatatagggacggagggagtat 284  Q
    ||||||||||||||||||||||||||||||    
T  92029 ggtgcttacatatagggacggagggagtat 92000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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