View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350_low_31 (Length: 362)
Name: NF1350_low_31
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 356
Target Start/End: Complemental strand, 4761311 - 4760968
Alignment:
| Q |
13 |
attctctataatatgttcgtgtatgggtctctagtatgtttatgcatgtaaattgaattagactttaactactgcaacttagaactgaactacataactt |
112 |
Q |
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| T |
4761311 |
attctctataatatgttcgtgtatgggtctctagtatgtgtatgcatgtaaattgaattagactttaactactgcaacttataactgaactacataactt |
4761212 |
T |
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| Q |
113 |
gactgaattgagctaagggttaaagtaggaaaatgatcgagattcaaaccctgacgaaagagaaactactaacataaaactaatatactaacataatcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4761211 |
gactgaattgagctaagggttaaagtaggaaaatgatcgagattcaaaccctgacgaaagagaaactactaacataaagctaatatactaacataatcat |
4761112 |
T |
|
| Q |
213 |
tacaatttacaacttaggtgaaggctgaaactgtttaattaattgcacttgttggttgcaggaccatcttggagaggttgtgtttgtggagcttccagaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4761111 |
tacaatttacaacttaggtgaaggctgaaactgtttaattaattgcacttgttggttgcaggaccatcttggagaggttgtgtttgtggagcttccagaa |
4761012 |
T |
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| Q |
313 |
cctgggggttcagttacaaagggtaacggtttcggagctgttga |
356 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4761011 |
cctgggggttcagttacaaagggtaatggtttcggagctgttga |
4760968 |
T |
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