View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350_low_33 (Length: 354)
Name: NF1350_low_33
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 29 - 346
Target Start/End: Original strand, 34736628 - 34736945
Alignment:
| Q |
29 |
agttatttcttaataaatatgtaattccttgcgtactttaatagcttaaagtatcatttccttctacacaagaaaagtgggggaccaaaaaatttaggcc |
128 |
Q |
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| T |
34736628 |
agttatttcttaataaatatgtaattccttgcgtactttaatagcttaaagtatcatttccttctacacaagaaaagtgggggaccaaaaaatttaggcc |
34736727 |
T |
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| Q |
129 |
acccaattagaggaataggacataacgtgtaaattattgaagaaaacttactaatatcaaacaaactcatctgtttcacagcttgtgtgtatgatacaaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34736728 |
acccaattagaggaataggacataacgtgtaaattattgaagaaaacttactaatatcaaacaaactcatctgtttcacagcttgtgtgtatgatacaaa |
34736827 |
T |
|
| Q |
229 |
tgccaagtctgaacaaaaatggacctctcaaaatttggattccaaacgttttcgactttcataagatatatacgtagatatatatattttcatcacgagc |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34736828 |
tgccaagtctgaacaaaaatggacctctcaaaatttggaatccaaacgttttcgactttcatatgatatatacgtagatatatatattttcatcacgagc |
34736927 |
T |
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| Q |
329 |
caaaattaaagaataatc |
346 |
Q |
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|||||||||||||||||| |
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| T |
34736928 |
caaaattaaagaataatc |
34736945 |
T |
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