View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350_low_4 (Length: 638)
Name: NF1350_low_4
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 98 - 338
Target Start/End: Original strand, 35786628 - 35786868
Alignment:
| Q |
98 |
gatttaacagaatcaccacttgcatgttcaaaatcttgatttagttgttgatgatgatattgttgatggtgttgcacttgcacttgcaccatttcttgat |
197 |
Q |
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| T |
35786628 |
gatttaacagaatcaccacttgcatgttcaaaatcttgatttagttgttgatgatgatattgttgatgctgttgcacttgcacttgcaccatttcttgat |
35786727 |
T |
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| Q |
198 |
gagggttatgatgaaaatgaactaaaccattattgttattatagaaaactggttggtgatgatgatgaaaattattgtaaacaccaaatgggacaaaatt |
297 |
Q |
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| T |
35786728 |
gagggttatgatgaaaatgaactaaaccattattgttattatagaaaactggttggtgatgatgatgaaaattattgtaaacaccaaatgggacaaaatt |
35786827 |
T |
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| Q |
298 |
attgtaaactgagaaaccagaaggacgaggaagtaaaggac |
338 |
Q |
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| T |
35786828 |
attgtaaactgagaaaccagaaggacgaggaagtaaaggac |
35786868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 428 - 629
Target Start/End: Original strand, 35786958 - 35787159
Alignment:
| Q |
428 |
ttaagctgagccctagaaccatagagaataatagcagcacgatcataagctttagcagcatcttcagcagttgaaaaagtaccaagccatttacgagtac |
527 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35786958 |
ttaagctgagccctagaaccatagagaataatagcagcacgatcataagctttagcagcatcttcagcagttgaaaaagtaccaagccatttacgagtac |
35787057 |
T |
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| Q |
528 |
gtttacgtggttcacgaatttcagcaacccatttaccccaactacgttgtcttacaccacggtatctgaatttgttgttatcaggtccacctttaccttt |
627 |
Q |
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| T |
35787058 |
gtttacgtggttcacgaatttcagcaacccatttaccccaactacgttgtcttacaccacggtatctgaatttgttgttatcaggtccacctttaccttt |
35787157 |
T |
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| Q |
628 |
gc |
629 |
Q |
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|| |
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| T |
35787158 |
gc |
35787159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 568
Target Start/End: Original strand, 25896641 - 25896674
Alignment:
| Q |
535 |
tggttcacgaatttcagcaacccatttaccccaa |
568 |
Q |
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| T |
25896641 |
tggttcacgaatctcagcaacccatttaccccaa |
25896674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Complemental strand, 52690586 - 52690554
Alignment:
| Q |
536 |
ggttcacgaatttcagcaacccatttaccccaa |
568 |
Q |
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| T |
52690586 |
ggttcacggatttcagcaacccatttaccccaa |
52690554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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