View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350_low_44 (Length: 251)
Name: NF1350_low_44
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39808302 - 39808525
Alignment:
| Q |
1 |
ttgttattattaatttattgtgcccatttt--tgtggaaattaactaggtatacgttcagtatatataccacttgttttcataacagaagtatatataat |
98 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39808302 |
ttgttattattaatttatcgtgcccatttttttgtggaaattaactaggtatacgttcagtatatatactacttgttttcataacagaagtatatataat |
39808401 |
T |
|
| Q |
99 |
aaaaagatagcttcatcaagtttatggtcaagattatgttgtattctggaaaagttgcgcaatttgaatatannnnnnnagttcagcaactacacttata |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39808402 |
aaaaagatagcttcatcaagtttatggtcaagattatgttgtattctgggaaagttgcgcaatttgaatatacttttttagttcagcaactacacttata |
39808501 |
T |
|
| Q |
199 |
cacatcagttcatcactaccaaca |
222 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
39808502 |
cacatcagttcatcactaccaaca |
39808525 |
T |
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