View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350_low_46 (Length: 251)
Name: NF1350_low_46
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_low_46 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 26 - 251
Target Start/End: Complemental strand, 29105066 - 29104841
Alignment:
| Q |
26 |
acttccatcttctacaacgacagaaacgaagccattcagtatattcaccacgttcaccaacttcaaagagccatgcactcgttactcgagctcgaaccat |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29105066 |
acttccatcttctacaacgacagaaacgaagccattcagtatattcaccacgttaaccaacttcaaagagccatgcactcgttactcgagctcgaaccat |
29104967 |
T |
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| Q |
126 |
cgtctccgaaactcatccatgcacaaaacctaatgcaaatcgctatgaagaggctccaaaaagagttttaccagatattaaccatgaaccaggcttgctt |
225 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29104966 |
cgtctccgaaactcatccatgctcaaaacctaatgcaaatcgctatgaagaggctccaaaaagagttttaccagatattaaccatgaaccaggcctgctt |
29104867 |
T |
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| Q |
226 |
agacgctgaatccttctctgtcggat |
251 |
Q |
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|||||||||||||||||||||||||| |
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| T |
29104866 |
agacgctgaatccttctctgtcggat |
29104841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 26 - 243
Target Start/End: Complemental strand, 29090805 - 29090588
Alignment:
| Q |
26 |
acttccatcttctacaacgacagaaacgaagccattcagtatattcaccacgttcaccaacttcaaagagccatgcactcgttactcgagctcgaaccat |
125 |
Q |
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|||||| ||||||||||| ||| | |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29090805 |
acttccctcttctacaacaacaaatgtgaagccattcagtacattcaccacgttaaccaacttcaaagagccatgcactcgttactcgagctcgaaccat |
29090706 |
T |
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| Q |
126 |
cgtctccgaaactcatccatgcacaaaacctaatgcaaatcgctatgaagaggctccaaaaagagttttaccagatattaaccatgaaccaggcttgctt |
225 |
Q |
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||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||| | ||| |
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| T |
29090705 |
cgtctccagaactcatccacgcacaaaacctaatgcaaattgctatgaagaggctccaaaaagaattctaccagatcttaaccatgaaccaggcatactt |
29090606 |
T |
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| Q |
226 |
agacgctgaatccttctc |
243 |
Q |
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|||| ||||||||||||| |
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| T |
29090605 |
agactctgaatccttctc |
29090588 |
T |
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