View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1350_low_7 (Length: 597)

Name: NF1350_low_7
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1350_low_7
NF1350_low_7
[»] chr8 (20 HSPs)
chr8 (34-591)||(6352312-6352872)
chr8 (102-284)||(6424336-6424518)
chr8 (469-588)||(7459150-7459269)
chr8 (470-592)||(6363250-6363372)
chr8 (166-281)||(7459418-7459533)
chr8 (166-279)||(6363421-6363534)
chr8 (492-589)||(6424158-6424255)
chr8 (481-589)||(6370115-6370223)
chr8 (492-591)||(6274575-6274674)
chr8 (492-591)||(6331959-6332058)
chr8 (165-282)||(6370314-6370431)
chr8 (166-286)||(6332158-6332278)
chr8 (142-236)||(6274828-6274922)
chr8 (166-283)||(6289273-6289390)
chr8 (166-286)||(6321656-6321773)
chr8 (30-83)||(6424519-6424572)
chr8 (540-588)||(6410251-6410299)
chr8 (492-578)||(6321467-6321553)
chr8 (30-83)||(6363628-6363681)
chr8 (490-566)||(6288852-6288928)


Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 34 - 591
Target Start/End: Complemental strand, 6352872 - 6352312
Alignment:
Q  34 ccacacatcatcaaaaaactctcggtaaattgaatagtttaactttgttac------acaaaaataaaactaagactaatttgtaaacattatgttattt 127  Q
    |||||||||||||||||||| ||||||||   ||||||||||||||||||       | ||||||||||||||||||| |||||||||||||||||||||    
T  6352872 ccacacatcatcaaaaaactttcggtaaagctaatagtttaactttgttaagaaattaaaaaaataaaactaagactattttgtaaacattatgttattt 6352773  T
Q  128 ttataattggtgacattattgcttgctacctttaattcaggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccata 227  Q
    || |||||||||||||||||||||||||  |||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  6352772 ttgtaattggtgacattattgcttgctaaatttaatacaggagtttccaccaaagagcaagctagatagccaaaaatttggtgataataccagcaccata 6352673  T
Q  228 accaaagaaaacttggagccaaacatgggcggggtcactgtagaacaggtaatgacatatttgattagttctattattctttttccaaagtggcgttcgt 327  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||    |||||||||||||||||||||    
T  6352672 accaaagaaaacttggagccaaacatgggtggggtcaccgtagaacaggtaatgacatatttgatcagttctatt----tttttccaaagtggcgttcgt 6352577  T
Q  328 gaaattcgtccgggagaaaatttgaaatctgtccctctaggttataaggtcgactttaaccactgggttgacacctcatggacttggttcaattaata-t 426  Q
    ||| |||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |    
T  6352576 gaatttcgtccgggagaaaatttgaaatctatcccttgaggttataaggtcgactttaaccactgggttgacacctcatggacttagtttgattaatatt 6352477  T
Q  427 tttctccatgattgaannnnnnnnattcaagtaaaccaccgaagctaaatttaattttgtcatacaggctatccaaaacaatagattgtacatactcgat 526  Q
    ||||||||||||||||        ||||||||||||||| | |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||    
T  6352476 tttctccatgattgaattttttttattcaagtaaaccacagtagctaaattttattttgtcatacaggctatccaagacaatagattgtacatacttgat 6352377  T
Q  527 caccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaaggcctatgctac 591  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6352376 caccacgacccactctttccatatttgaggaaaataaatgcaaccgagacaaaggcctatgctac 6352312  T

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Target: chr8; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 102 - 284
Target Start/End: Complemental strand, 6424518 - 6424336
Alignment:
Q  102 actaatttgtaaacattatgttatttttataattggtgacattattgcttgctacctttaattcaggagtttccaccaacgagcaagctagatagccaaa 201  Q
    |||| |||||||||| |||||||||| |||||||||| |||||||||||||  ||  |||||||||||||| ||||  | ||||||||||||||||||||    
T  6424518 actattttgtaaacaatatgttatttctataattggtaacattattgcttgaaacaattaattcaggagttcccacataagagcaagctagatagccaaa 6424419  T
Q  202 tatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcactgtagaacaggtaatgaca 284  Q
     || ||| ||||| ||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||||||||||||||    
T  6424418 aatatggagataacaccagcaccataaccaaagaacaattggagccaaacttgggcgggatcactgtagaacaggtaatgaca 6424336  T

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Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 469 - 588
Target Start/End: Complemental strand, 7459269 - 7459150
Alignment:
Q  469 agctaaatttaattttgtcatacaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgca 568  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |  ||  ||||||||||||||| ||||||||||    
T  7459269 agctaaattttattttgtcatacaggctatccaaaacaataaattgtacatacttgatcaccacgatctactaattccatatttgaggagaataaatgca 7459170  T
Q  569 actgagacaaaggcctatgc 588  Q
    |||||||||||| |||||||    
T  7459169 actgagacaaagtcctatgc 7459150  T

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Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 470 - 592
Target Start/End: Complemental strand, 6363372 - 6363250
Alignment:
Q  470 gctaaatttaattttgtcatacaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaa 569  Q
    ||||||||| |||||||   |||||||||||| || |||| ||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  6363372 gctaaattttattttgtggaacaggctatccagaataataaattgttcatactggatcaccacgacccactctttccatatttgaggaaaataaatgcaa 6363273  T
Q  570 ctgagacaaaggcctatgctact 592  Q
    | ||||| |||||||||||||||    
T  6363272 ccgagactaaggcctatgctact 6363250  T

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Target: chr8; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 166 - 281
Target Start/End: Complemental strand, 7459533 - 7459418
Alignment:
Q  166 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 265  Q
    ||||||||||||||| ||||||| |||||||| || ||| |||||||||||||||||| |||||||  ||  ||||||||||||||||||| ||||||||    
T  7459533 aggagtttccaccaaagagcaagttagatagcaaactatatggtgataataccagcacaataaccattgatcacttggagccaaacatgggaggggtcac 7459434  T
Q  266 tgtagaacaggtaatg 281  Q
     |||||||||||||||    
T  7459433 agtagaacaggtaatg 7459418  T

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Target: chr8; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 166 - 279
Target Start/End: Complemental strand, 6363534 - 6363421
Alignment:
Q  166 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 265  Q
    ||||||||||||||| ||||||| |||||| |||| | |||||| |||||||||||||||||||||||||| | ||| ||||||||||||  ||||||||    
T  6363534 aggagtttccaccaaagagcaagttagatacccaactctttggtaataataccagcaccataaccaaagaacatttgcagccaaacatggttggggtcac 6363435  T
Q  266 tgtagaacaggtaa 279  Q
     |||||||||||||    
T  6363434 ggtagaacaggtaa 6363421  T

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Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 492 - 589
Target Start/End: Complemental strand, 6424255 - 6424158
Alignment:
Q  492 aggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaaggcctatgct 589  Q
    |||||||||||||||| | ||||||||| || |||||| | |||    | | ||||||||||||||||||||||||||||||||||||||||||||||    
T  6424255 aggctatccaaaacaacaaattgtacatccttgatcactatgacatagtatatccatatttgaggaaaataaatgcaactgagacaaaggcctatgct 6424158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 481 - 589
Target Start/End: Complemental strand, 6370223 - 6370115
Alignment:
Q  481 ttttgtcatacaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaag 580  Q
    |||||||  |||||||||| || ||||||||||||||||||| |||||||||||  |  ||| |||||||||||||||| |||||| ||||||  |||||    
T  6370223 ttttgtctaacaggctatcgaagacaatagattgtacatacttgatcaccacgatgcaatctatccatatttgaggaaagtaaatgaaactgaagcaaag 6370124  T
Q  581 gcctatgct 589  Q
     ||||||||    
T  6370123 acctatgct 6370115  T

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Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 492 - 591
Target Start/End: Complemental strand, 6274674 - 6274575
Alignment:
Q  492 aggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaaggcctatgctac 591  Q
    |||||||||||| ||| | |||||||||||| ||| |||||||| || | | ||||||| ||||||||||||||||| |||| |||||||| ||||||||    
T  6274674 aggctatccaaaccaacaaattgtacatacttgattaccacgactcgttatatccatatctgaggaaaataaatgcagctgatacaaaggcatatgctac 6274575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 492 - 591
Target Start/End: Complemental strand, 6332058 - 6331959
Alignment:
Q  492 aggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaaggcctatgctac 591  Q
    |||||||||||||||| ||  | |||||||| |||||||| |||||  | |||||||||||||||||||||||  ||||||| |||||||| ||||||||    
T  6332058 aggctatccaaaacaacaggctttacatacttgatcaccatgacccaatatttccatatttgaggaaaataaactcaactgatacaaaggcatatgctac 6331959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 165 - 282
Target Start/End: Complemental strand, 6370431 - 6370314
Alignment:
Q  165 caggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtca 264  Q
    |||||| |||||  || ||||||| |||||||  || | | |||||||||||||||||| |||||||||||| |||||||||||||||||   |||||||    
T  6370431 caggagcttccaagaaagagcaagttagatagtaaactctatggtgataataccagcacaataaccaaagaacacttggagccaaacatgaatggggtca 6370332  T
Q  265 ctgtagaacaggtaatga 282  Q
    | ||| || |||||||||    
T  6370331 cagtaaaagaggtaatga 6370314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 286
Target Start/End: Complemental strand, 6332278 - 6332158
Alignment:
Q  166 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 265  Q
    ||||||| ||||||| |||||||||||||| |||| | |  ||||||||||| ||||| |||||| ||||| | ||  ||| ||||||||  ||||||||    
T  6332278 aggagttcccaccaaagagcaagctagatacccaactctacggtgataatacgagcacaataaccgaagaacagttacagctaaacatggatggggtcac 6332179  T
Q  266 tgtagaacaggtaatgacata 286  Q
    ||||||| | |||||||||||    
T  6332178 tgtagaagaagtaatgacata 6332158  T

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Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 6274922 - 6274828
Alignment:
Q  142 attattgcttgctacctttaattcaggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaa 236  Q
    ||||||||||| ||  ||||||  |||| |||||||||| ||||||||||||||| ||| | |  ||||||||||||||||| ||||||||||||    
T  6274922 attattgcttgatatatttaatgtaggaatttccaccaaagagcaagctagataggcaactctacggtgataataccagcacaataaccaaagaa 6274828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 283
Target Start/End: Complemental strand, 6289390 - 6289273
Alignment:
Q  166 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 265  Q
    ||||||| ||||||| |||||||||| ||||||||   |  ||||||||||| ||||| |||||||||||| | ||| ||| ||| ||||  ||||||||    
T  6289390 aggagttcccaccaaagagcaagctaaatagccaagactacggtgataatacgagcacaataaccaaagaacagttgcagctaaatatggatggggtcac 6289291  T
Q  266 tgtagaacaggtaatgac 283  Q
    ||||||| | ||||||||    
T  6289290 tgtagaagaagtaatgac 6289273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 166 - 286
Target Start/End: Complemental strand, 6321773 - 6321656
Alignment:
Q  166 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 265  Q
    ||||||| ||||||| |||||||||| ||| || | |||  ||||||||||| ||||| |||||| ||||| | || |||| ||||||||  ||||||||    
T  6321773 aggagttcccaccaaagagcaagctaaata-ccgattat--ggtgataatacgagcacaataaccgaagaacagttagagctaaacatggatggggtcac 6321677  T
Q  266 tgtagaacaggtaatgacata 286  Q
    ||||||| | |||||||||||    
T  6321676 tgtagaagaagtaatgacata 6321656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 6424572 - 6424519
Alignment:
Q  30 gaatccacacatcatcaaaaaactctcggtaaattgaatagtttaactttgtta 83  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||| | ||||||    
T  6424572 gaatccacacatcatcaaaaaactcacggtaaagttaatagtttagcattgtta 6424519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 540 - 588
Target Start/End: Complemental strand, 6410299 - 6410251
Alignment:
Q  540 tctttccatatttgaggaaaataaatgcaactgagacaaaggcctatgc 588  Q
    |||| ||||||||||||||||||||||||||||   |||||||||||||    
T  6410299 tcttaccatatttgaggaaaataaatgcaactggcgcaaaggcctatgc 6410251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 578
Target Start/End: Complemental strand, 6321553 - 6321467
Alignment:
Q  492 aggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaa 578  Q
    |||||||||||||||| ||  | |||||||| |||||||| ||| |  | | ||||||| ||||||||||||||||| |||| ||||    
T  6321553 aggctatccaaaacaacaggctttacatacttgatcaccatgactcaatatatccatatctgaggaaaataaatgcagctgatacaa 6321467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 6363681 - 6363628
Alignment:
Q  30 gaatccacacatcatcaaaaaactctcggtaaattgaatagtttaactttgtta 83  Q
    ||||||||||||||| |||||||||| |||||| | ||| ||||||| ||||||    
T  6363681 gaatccacacatcataaaaaaactcttggtaaagttaatggtttaacattgtta 6363628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 566
Target Start/End: Complemental strand, 6288928 - 6288852
Alignment:
Q  490 acaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatg 566  Q
    |||||||||||| ||||| ||| | |||||||| ||| |||| ||| |  | |||||||||||||| ||||||||||    
T  6288928 acaggctatccataacaagagactttacatacttgattaccaagactcaatatttccatatttgagcaaaataaatg 6288852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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