View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350_low_8 (Length: 556)
Name: NF1350_low_8
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 353
Target Start/End: Complemental strand, 1696396 - 1696050
Alignment:
| Q |
7 |
gtatcataggtttgttaatcacttcttcttctcttttcagtatcatttcagtttattttaactttttctcataatcgattatcatgcatgcatgcataaa |
106 |
Q |
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| T |
1696396 |
gtatcataggtttgttaatcacttcttcttctcttttcagtatcatttcagtttattttaactttttatcataatcgattatcatgcatgcatgcataaa |
1696297 |
T |
|
| Q |
107 |
gtataattttaactttttctgataatcgattttagaagtctttagttcagttacgattgattttagctttttatgttaatcgattaatcatacatgtttc |
206 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1696296 |
gtataattttaactttttctgataatcgattttggaagtttttagttcagttacgattgattttagctttttatgttaatcgattaatcatacatgtttc |
1696197 |
T |
|
| Q |
207 |
tgattgatttttgtgaaatttgaatgcagggaatgttatctcgtttggactgttcttctcaccagcgtaatcaattaaactctctctttctctgtttatt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1696196 |
tgattgatttttgtgaaatttgaatgcagggaatgttatctcgtttggactgttcttctcaccagcgtaatcaattaaactctctctttctctgtttatt |
1696097 |
T |
|
| Q |
307 |
actttgttttggtgtttacgtgaatatagcgtaatttgttatgctat |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1696096 |
actttgttttggtgtttacgtgaatatagcgtaatttgttatgctat |
1696050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 334
Target Start/End: Complemental strand, 1685839 - 1685520
Alignment:
| Q |
7 |
gtatcataggtttgttaatcacttcttcttctcttttcagtatcatttcagtttattttaactttttctcataatcgattatcatgcatgcatgcataaa |
106 |
Q |
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| T |
1685839 |
gtatcataggtttgttaatcacttcttcttctcttttcagt-----------ttattttaactttttatcataatcgattatcatgcatgcatgcataaa |
1685751 |
T |
|
| Q |
107 |
gtataattttaactttttctgataatcgattttagaagtctttagttcagttacgattgattttagctttttatgttaatcgattaatcatacatgtttc |
206 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1685750 |
gtataattttaactttttctgataatcgatttttgaagtttttagttcagttacgattgattttagctttttgtgttaatcgattaatcatacatgtttc |
1685651 |
T |
|
| Q |
207 |
tgattgat--ttttgtgaaa-tttgaatgcagggaatgttatctcgtttggactgttcttctcaccagcgtaatcaattaaactctctctttctctgttt |
303 |
Q |
| |
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|||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| ||| |
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| T |
1685650 |
tgattgatttttttctgaaattttgaatgaagggaatgttatctcgtttggactgttcttcgcaccagggtaactaattaaactctctctttctctattt |
1685551 |
T |
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| Q |
304 |
attactttgttttggtgtttacgtgaatata |
334 |
Q |
| |
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|||||||||||||| |||||||||||||||| |
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| T |
1685550 |
attactttgttttgttgtttacgtgaatata |
1685520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 413 - 485
Target Start/End: Complemental strand, 1695981 - 1695909
Alignment:
| Q |
413 |
atgaaagaatcaaccttagtataccagctatatttagatcaacgattagtctgacataatcatagtttatcac |
485 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1695981 |
atgaaagaatcaaccttagtatacctgctatatttagatcaacgatgagtctgacataatcatagtttatcac |
1695909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 458
Target Start/End: Complemental strand, 1685447 - 1685404
Alignment:
| Q |
415 |
gaaagaatcaaccttagtataccagctatatttagatcaacgat |
458 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1685447 |
gaaagaatcaacctaagtataccagctatatttagatcaacgat |
1685404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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