View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350_low_9 (Length: 539)
Name: NF1350_low_9
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 261 - 527
Target Start/End: Original strand, 10991604 - 10991870
Alignment:
| Q |
261 |
ggtaccacttgaactggactaacccacaagctattagaatacgatatatcattccgccatctaaaagtttcagcacttccttttttaactacctcattca |
360 |
Q |
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| T |
10991604 |
ggtaccacttgaactggtctaacccacaagctattagaatacgatatatcatttcgccatctaaaagtttcagcacttccttttttaactacctcattca |
10991703 |
T |
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| Q |
361 |
ttgttggattgagtctccttttggattgaacaaccaatttaaactcttctaccaatttgattttgtgcatgcaatatcctaggctttgatgcatcctttc |
460 |
Q |
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| T |
10991704 |
ttgttggattgagtctccttttggattgaacaaccaatttaaactctcctaccaatttgattttgtgcatgcaatatcctaggctttgatgcatcctttc |
10991803 |
T |
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| Q |
461 |
tcataaaaacatatttgagatacagtagtatttgctccttgacattatgatgctttaagttactctg |
527 |
Q |
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| T |
10991804 |
tcataaaaacatatttgagatacagtagtatttgctccttgacattatgatgctttaagttactctg |
10991870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 10991113 - 10991332
Alignment:
| Q |
30 |
taccatgaaatgacattttttcggattcaacatcaaatttgtttttacagatctctttcaatacatcatatacgtctttgaggcagctatcaaaatattt |
129 |
Q |
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| T |
10991113 |
taccatgaaatgacattttttcggattcaacatcaaatttgtttttacacatctctttcaatacatcatatacgtctttgaggcagctatcaaaatattt |
10991212 |
T |
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| Q |
130 |
tccaaacatctaaaaatcatccatcgagaattcaatgttcttctaaatcaagtatgagaatatttgaaagaattcatctttgaaacattgttactgcatt |
229 |
Q |
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| T |
10991213 |
tccaaacgtctaaaaatcatccatcgagaattcaatgttcttctaaatcaagcatgagaatatttgaaagaattcatctttaaaacattgttagtgcatt |
10991312 |
T |
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| Q |
230 |
gcacaatctaaaggacattc |
249 |
Q |
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| T |
10991313 |
gcacaatctaaaggacattc |
10991332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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