View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1351-INSERTION-4 (Length: 816)

Name: NF1351-INSERTION-4
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1351-INSERTION-4
NF1351-INSERTION-4
[»] chr6 (14 HSPs)
chr6 (8-816)||(2106623-2107429)
chr6 (380-739)||(2098239-2098577)
chr6 (70-323)||(2098956-2099210)
chr6 (132-238)||(2059196-2059302)
chr6 (132-238)||(2063010-2063117)
chr6 (654-747)||(2047833-2047926)
chr6 (528-658)||(2088541-2088674)
chr6 (380-443)||(2083207-2083270)
chr6 (156-314)||(2088795-2088950)
chr6 (528-577)||(2048176-2048225)
chr6 (170-239)||(2048918-2048987)
chr6 (170-238)||(2055022-2055090)
chr6 (168-237)||(2042399-2042468)
chr6 (498-579)||(2054417-2054498)


Alignment Details
Target: chr6 (Bit Score: 738; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 8 - 816
Target Start/End: Complemental strand, 2107429 - 2106623
Alignment:
Q  8 attaggaaatcaaataatcaaactaaaagattcatttttggtttcaaaggatgcttaaatggtttcaaagcagcttcggatgcaagtcattgcagttctt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2107429 attaggaaatcaaataatcaaactaaaagattcatttttggtttcaaaggatgcttaaatggtttcaaagcagctttggatgcaagtcattgcagttctt 2107330  T
Q  108 gttcattaggaaatcaaacaattgaacatttgaaacctatagggactaagaaaagtcttaaggtctaacctccaagaaagatggcccgatttgcttgtgc 207  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2107329 gttcattaggaaatcaaacaattgaacatttgtaacctatagggactaagaaaagtcttaaggtctaacctccaagaaagatggcccgatttgcttgtgc 2107230  T
Q  208 atcagcttcagcgttatattccttaaacattttcaaaagaacaaacatggtatttgttaacagttgaggtaaaagtataaagacttgtaatctataattg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2107229 atcagcttcagcgttatattccttaaacattttcaaaagaacaaacatggtatttgttaacagttgaggtaaaagtataaagacttgtaatctataattg 2107130  T
Q  308 aaaagattgttcaagacttgtaaccatttgtattttgacagtaaaaaataattaaacagtcttatttagcagaagataaagtatgatcaaaatgatcccc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2107129 aaaagattgttcaagacttgtaaccatttgtattttgacagtaaaaaataattaaacagtcttatttagcagaagataaagtatgatcaaaatgatcccc 2107030  T
Q  408 aaattccaatctaattgttttcaacttcacaaagcagtgctcaattgagaaagatgcaacttaaacataatagaacaaattgctaaatatataccctagg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2107029 aaattccaatctaattgttttcaacttcacaaagcagtgctcaattgagaaagatgcaacttaaacataatagaacaaattgctaaatatataccctagg 2106930  T
Q  508 aatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaataagcattgttgatgttccataaacctttc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2106929 aatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaataagcattgttgatgttccataaacctttc 2106830  T
Q  608 aactgttggaaaacaataacatgttggtaaattgtttagaaaagaaaaatgtataaaaaatgaagagtagcaatgagtaaatcttaacaatatctaacca 707  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2106829 aactgttgcaaaacaataacatgttggtaaattgtttagaaaagaaaaatgtataaaaaatgaagagtagcaatgagtaaatcttaacaatatctaacca 2106730  T
Q  708 attaggaaaggatataaaactaaatgaattcaaaggagccnnnnnnnnnnnnnnnnnnaagaaagggatagttccatagttgtttttaacaaagaaatca 807  Q
    ||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||    
T  2106729 attaggaaaggatataaaactaaatgaattcaaaggagcc--ttttttttttttttttaagaaagggatagttccatagttgtttttaacaaagaaatca 2106632  T
Q  808 tgtcatcgc 816  Q
    |||||||||    
T  2106631 tgtcatcgc 2106623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 380 - 739
Target Start/End: Complemental strand, 2098577 - 2098239
Alignment:
Q  380 aagataaagtatgatcaaaatgatccccaaattccaatctaattgttttcaacttcacaaagcagtgctcaattgagaaagatgcaacttaaacataata 479  Q
    ||||||||||||||||||  |||| || |||||||||||||  ||||| ||||||||||||||| ||||||||||||||||  |||||||||            
T  2098577 aagataaagtatgatcaaggtgattcctaaattccaatctagatgtttccaacttcacaaagcaatgctcaattgagaaaggagcaacttaa-------- 2098486  T
Q  480 gaacaaattgctaaatatataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaata 579  Q
                  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  2098485 --------------ataaataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaggcctcattgcataagttccttaaatg 2098400  T
Q  580 agcattgttgatgttccataaacctttcaactgttggaaaacaataac--atgttggtaaattgtttagaaaagaaaaatgtataaaaaatgaagagtag 677  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2098399 agcattgttgatgttccataaacctttcagctgttgcaaaacaataacatatgttggtaaattgtttagaaaagaaaaatgtataaacaatgaagagtag 2098300  T
Q  678 caatgagtaaatcttaacaatatctaaccaattaggaaaggatataaaactaaatgaattca 739  Q
       ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  2098299 tggtgagtaaatcttaacaatatctaaccaattagg-aagaatatgaaactaaatgaattca 2098239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 70 - 323
Target Start/End: Complemental strand, 2099210 - 2098956
Alignment:
Q  70 tttcaaagcagcttcggatgcaagtcattgcagttcttgttcattaggaaatcaaacaattgaacatttgaaacctataggga-ctaagaaaagtcttaa 168  Q
    |||||||||||||| || | |||||||||||| |||||||| |||| ||||||||| |||  |||| ||||||| | |||||| ||||||||  ||||||    
T  2099210 tttcaaagcagctttggctccaagtcattgcaattcttgtttattaagaaatcaaagaatcaaacaattgaaacttgtagggatctaagaaatttcttaa 2099111  T
Q  169 ggtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacattttcaaaagaacaaacatggtatttgttaac 268  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||||| |||||||||||||||| ||||| || ||||||||||    
T  2099110 ggtctaacctccgagaaagatggcccgatttgcttgagcatcagcttcagtgttatgttccttcaacattttcaaaagaaaaaacacggcatttgttaac 2099011  T
Q  269 agttgaggtaaaagtataaagacttgtaatctataattgaaaagattgttcaaga 323  Q
     |||  ||||||| ||||||||||||||| ||| ||||||| |||||||| ||||    
T  2099010 ggttagggtaaaaatataaagacttgtaagctagaattgaagagattgtttaaga 2098956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 2059302 - 2059196
Alignment:
Q  132 aacatttgaaacctatagggactaagaaaagtcttaaggtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattcctt 231  Q
    |||||||||||| |||||  | |||||||||||||||||||||||||| |||| || | |||   |||||||| |||| |||||||||||||||||||||    
T  2059302 aacatttgaaacatatagaaattaagaaaagtcttaaggtctaacctcgaagataggtagccacgtttgcttgagcattagcttcagcgttatattcctt 2059203  T
Q  232 aaacatt 238  Q
    | |||||    
T  2059202 acacatt 2059196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 2063117 - 2063010
Alignment:
Q  132 aacatttgaaacctataggga-ctaagaaaagtcttaaggtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattcct 230  Q
    |||||||||||| |||||| | |||||||||||||| | |||||||| | |||| |||| ||||| |||||||| |||| | |||||| |||||||||||    
T  2063117 aacatttgaaacatataggaaactaagaaaagtcttgacgtctaaccacgaagatagatagcccggtttgcttgagcattaacttcagtgttatattcct 2063018  T
Q  231 taaacatt 238  Q
    ||||||||    
T  2063017 taaacatt 2063010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 654 - 747
Target Start/End: Complemental strand, 2047926 - 2047833
Alignment:
Q  654 aaatgtataaaaaatgaagagtagcaatgagtaaatcttaacaatatctaaccaattaggaaaggatata-aaactaaatgaattcaaaggagcc 747  Q
    |||||||||||||||| | |||| |||||||||||| ||||||||||||||||||||||| ||| |||||  || ||||||||| ||||||||||    
T  2047926 aaatgtataaaaaatggaaagtaacaatgagtaaatattaacaatatctaaccaattagg-aagaatatattaattaaatgaatccaaaggagcc 2047833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 528 - 658
Target Start/End: Complemental strand, 2088674 - 2088541
Alignment:
Q  528 agtgaaagttatcccttagctccaaagcctcattgcataagttccttaaataagcattgttgatgttccataaacctttcaactgttggaaaa-caataa 626  Q
    ||||||||| | || | |||||||||||||| || |||||| |||||||||  ||||||| |||||| ||| |||| || |||||||| |||| ||||||    
T  2088674 agtgaaagtcacccttcagctccaaagcctcgttacataagctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataa 2088575  T
Q  627 c--atgttggtaaattgtttagaaaagaaaaatg 658  Q
    |  || || ||| |||||||||||||||||||||    
T  2088574 catatcttagtatattgtttagaaaagaaaaatg 2088541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 380 - 443
Target Start/End: Complemental strand, 2083270 - 2083207
Alignment:
Q  380 aagataaagtatgatcaaaatgatccccaaattccaatctaattgttttcaacttcacaaagca 443  Q
    |||| ||||||||||||||||||| | ||||| ||||| ||||||||||||||| |||||||||    
T  2083270 aagaaaaagtatgatcaaaatgattctcaaataccaatgtaattgttttcaactccacaaagca 2083207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 314
Target Start/End: Complemental strand, 2088950 - 2088795
Alignment:
Q  156 agaaaagtcttaaggtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacattttcaaaagaacaaacat 255  Q
    ||||||||||| |||||| |||||| ||| ||| |||| | |||||||| ||||||||||||| ||||  ||||||||||| || |||| ||  ||||||    
T  2088950 agaaaagtcttgaggtctcacctccgagatagacggcctggtttgcttgagcatcagcttcagtgttaagttccttaaacaattacaaagga--aaacat 2088853  T
Q  256 ggtatttgttaacagttgaggtaaaagtataaagacttgtaatctataattgaaaagat 314  Q
    | |||||||| |||  |||| ||||  ||||| || ||||| |||| ||||||| ||||    
T  2088852 gttatttgtttaca-atgagataaatatataaggagttgtattctaaaattgaagagat 2088795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 528 - 577
Target Start/End: Complemental strand, 2048225 - 2048176
Alignment:
Q  528 agtgaaagttatcccttagctccaaagcctcattgcataagttccttaaa 577  Q
    |||||||||||||   ||||||||||||||||| ||||||||||||||||    
T  2048225 agtgaaagttatctgctagctccaaagcctcatcgcataagttccttaaa 2048176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 2048987 - 2048918
Alignment:
Q  170 gtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacattt 239  Q
    ||||||||||  ||| | |||||||| |||||||| ||||||||||||| |||| |||||||||| ||||    
T  2048987 gtctaacctcggagataaatggcccggtttgcttgagcatcagcttcagtgttacattccttaaatattt 2048918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 2055090 - 2055022
Alignment:
Q  170 gtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacatt 238  Q
    |||||||||| ||||  ||| ||||| |||||||| ||||||||| ||| |||| ||||||||||||||    
T  2055090 gtctaacctcgaagattgatagcccggtttgcttgagcatcagctccagtgttaaattccttaaacatt 2055022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 2042468 - 2042399
Alignment:
Q  168 aggtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacat 237  Q
    ||||||||||||  |||  ||| |||||||||||||| |||||||| |||  |||| |||||||||||||    
T  2042468 aggtctaacctcggagattgatagcccgatttgcttgagcatcagcctcaatgttaaattccttaaacat 2042399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 579
Target Start/End: Complemental strand, 2054498 - 2054417
Alignment:
Q  498 ataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaata 579  Q
    |||||||||||||||    |||||||||  |||||||| | ||| | |||| ||||||||||||||| ||||||| ||||||    
T  2054498 ataccctaggaatgtgttggatgctgaatgagtgaaagctttccttcagctgcaaagcctcattgcacaagttccataaata 2054417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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