View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351-INSERTION-5 (Length: 590)
Name: NF1351-INSERTION-5
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351-INSERTION-5 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 23 - 474
Target Start/End: Complemental strand, 32042166 - 32041715
Alignment:
| Q |
23 |
gggtacaaagtttgatgaagaagctcaatgaaatcacaaccctatgtggagttaaggcatgtggtatagttttcaagcctgatgatcttgaaccacaaat |
122 |
Q |
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| T |
32042166 |
gggtacaaagtttgatgaagaagctcaatgaaatcacaaccctatgtggagttaaggcatgtggtatagttttcaagcctgatgatcttgaaccacaaat |
32042067 |
T |
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| Q |
123 |
ttggccatccattgaaggagtccgtagtgtgctggttcgattcatgcagactccgaacttcgatcgagaccgaaagatgttcgaccatgagagttacttg |
222 |
Q |
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| T |
32042066 |
ttggccatccattgaaggagtccatagcgtgctggttcgattcatgcagactccgaacttcgatcgagaccgaaagatgttcgaccatgagagttacttg |
32041967 |
T |
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| Q |
223 |
aaggaaaggatccaaaagttgaatgagaagttgaagnnnnnnntgaaggagaataggatgatgtggatgagtgttcaattgcatcactatcttgaggcag |
322 |
Q |
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| T |
32041966 |
aaggaaaggatccaaaagttgaatgagaagttgaagaaaaaaatgaaggagaataggatgatgtggatgagtgttcaattgcatcactatcttgaggcag |
32041867 |
T |
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| Q |
323 |
ggaatgttcctgaggatttaagcacttcagatatgaatgatctcacatatgtggttgatgagaaaatgaaggaaattaatatgaagatggtgcaattgga |
422 |
Q |
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| T |
32041866 |
ggaatgttcctgaggatttaagcacttcagatatgaatgatctcacatatgtggttgatgagaaaatgaaggaaattaatatgaagatggtgcaattgga |
32041767 |
T |
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| Q |
423 |
gaaggatgacaggtcttagggcatgtgagtggtagtagctacaaaataagtc |
474 |
Q |
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| T |
32041766 |
gaaggatgagaggtcttagggcatgtgagtggtagtagctacaaaataagtc |
32041715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 32041692 - 32041606
Alignment:
| Q |
498 |
aatgttgggtgcggggtttggtgatgtcaatctccaaaagtgtctttcaagatgttgggtgtagtttttcttttggggggatatttt |
584 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32041692 |
aatgttgggtgtgggatttggtgatgtcaatctccaaaagtgtctttcaagatgttgggtgtagtttttcttttgggggaatatttt |
32041606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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