View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13510_high_2 (Length: 441)
Name: NF13510_high_2
Description: NF13510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13510_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 10054080 - 10054231
Alignment:
| Q |
17 |
agaaataaccaattcaccattcttaattttccttcatctctctcaaagatattttctctaatatcttc--------atcatcaacataatggatattgca |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
10054080 |
agaaaaaaccaattcaccattcttaattttccttcatctctctcaaagatattttctctaatatcttcaaagcttcatcatcaacatcatggatattgca |
10054179 |
T |
|
| Q |
109 |
cattttatattcggagtatttggtacgttcataatcttttttatattcttgg |
160 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10054180 |
cattttatatttggagtatttggtacgttcataatcttttttatattcttgg |
10054231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 334 - 431
Target Start/End: Original strand, 10054416 - 10054513
Alignment:
| Q |
334 |
atggtgtataaaaatttaatcttttttgtagaatcactttcaagaggatcattgtcaacaaatcaactgaaaaattctctggtgttccttaccctatg |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10054416 |
atggtgtataaaaatttaatcttttttgtagaatcacgttcaagaggatcattgtcaacaaatcaactgaaaaattctctggtgttccttaccctatg |
10054513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 10054286 - 10054342
Alignment:
| Q |
204 |
tgtgatgcaggaaatgcttttggcctttttctcttcttggctccaatgtatagattc |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10054286 |
tgtgatgcaggaaatgcttttggcctttttctcttcttggctccaatgtatagattc |
10054342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University