View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13510_low_3 (Length: 319)
Name: NF13510_low_3
Description: NF13510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13510_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 6994076 - 6993881
Alignment:
| Q |
18 |
actaacactaccacactcttcctctaattaatgcactacctcaatcccaccaattcccttcatacacatttaatgttttgtcacaaaattttcacttcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6994076 |
actaacactaccacactcttcctctaattaatgcactacctcaatcccaccaattcccttcatacacatttaatgttttgtcacaaaattttcacttcaa |
6993977 |
T |
|
| Q |
118 |
ttccaaaacaacactc-nnnnnnngtcacaaccata-tttatccattccatccttaaaccttgatggttgtgttttatgaagacaactactcatat |
211 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6993976 |
ttccaaaacaacactcttttttttgtcacaaccatattttatccattccatccttaaaccttgatggttgtgttttatgaagacaactactcatat |
6993881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University