View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13510_low_5 (Length: 256)
Name: NF13510_low_5
Description: NF13510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13510_low_5 |
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| [»] scaffold1333 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 6241550 - 6241296
Alignment:
| Q |
1 |
tagagactaacttttaaaaagaaagaaaacaactttacaagtctcaagtatccacttacaagataactttgttctatagaagggtttcaaacgtattaaa |
100 |
Q |
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| T |
6241550 |
tagagactaatttttaaaaagaaaaaaaacaactttacaagtctcaagtatccacttacaagataactttgttcaatagaagggtttcaaacgtattaaa |
6241451 |
T |
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| Q |
101 |
ccgcaaaagcgcgtcatcttttatatgtaataaaaat------gagtctctaagatgtagacaaggaaataagatattgcaccgtttgacttatattcca |
194 |
Q |
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| T |
6241450 |
ccgcaaaagcgcgtcatcttt-atatgtaataaaaataaaaatgagtctctaagatgtagacaaggaaataagatattgcaccgtttgacttgtattcca |
6241352 |
T |
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| Q |
195 |
ccatttgagtttacacatatatacatggctaatattagggtagtcctacattgtta |
250 |
Q |
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| T |
6241351 |
ccatttgagtttacacatatatacatggctaatattagggtagtcctacattgtta |
6241296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 6212620 - 6212369
Alignment:
| Q |
4 |
agactaacttttaaaaagaaagaaaacaactttacaagtctcaagtatccacttacaagataactttgttctatagaagggtttcaaacgtattaaaccg |
103 |
Q |
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| T |
6212620 |
agactaatttttaaaaagaaaaaaaacaactttacaagtctcaagtatccacttacaagataactttgttctatagaagggtttaaaacgtattaaaccg |
6212521 |
T |
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| Q |
104 |
caaaagcgcgtcatcttttatatgtaataaaaatgagtctctaag--atgtagacaaggaaataagatattgcaccgtttgact----tatattccacca |
197 |
Q |
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| T |
6212520 |
caaaagcgcgtcatcttttatatgtaataaaaatgagtctctaagatatgtagacaaggaaataagatattgcaccgtttgacttatatatattccacca |
6212421 |
T |
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| Q |
198 |
tttgagtttacacatatatacatggctaatattagggtagtcctacattgtta |
250 |
Q |
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| T |
6212420 |
tttgag-ttacacatatatacatggctaatattagggtagtcctacattgtta |
6212369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1333 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1333
Description:
Target: scaffold1333; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 250 - 201
Alignment:
| Q |
78 |
agaagggtttcaaacgtattaaaccgcaaaagcgcgtcatcttttatatg |
127 |
Q |
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| T |
250 |
agaatggtttcgaacgtattaaaccccaaaagcatgtcatcttttatatg |
201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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