View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13511_high_13 (Length: 255)
Name: NF13511_high_13
Description: NF13511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13511_high_13 |
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| [»] scaffold0341 (2 HSPs) |
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| [»] chr1 (9 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 1013 - 777
Alignment:
| Q |
19 |
gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgccatgattgcatgga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1013 |
gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgccatgattgcatgga |
914 |
T |
|
| Q |
119 |
atttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
913 |
atttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtga |
814 |
T |
|
| Q |
219 |
ccttaaatatgctgtaggaaatgatgtgattggtcca |
255 |
Q |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
813 |
ccttaaatatgctgtaggaagtgatgtgattggtcca |
777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 8666 - 8430
Alignment:
| Q |
19 |
gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgccatgattgcatgga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8666 |
gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgccatgattgcatgga |
8567 |
T |
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| Q |
119 |
atttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtga |
218 |
Q |
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| T |
8566 |
atttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtga |
8467 |
T |
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| Q |
219 |
ccttaaatatgctgtaggaaatgatgtgattggtcca |
255 |
Q |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
8466 |
ccttaaatatgctgtaggaagtgatgtgattggtcca |
8430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 6506988 - 6506752
Alignment:
| Q |
19 |
gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgccatgattgcatgga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6506988 |
gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgccatgattgcatgga |
6506889 |
T |
|
| Q |
119 |
atttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6506888 |
atttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtga |
6506789 |
T |
|
| Q |
219 |
ccttaaatatgctgtaggaaatgatgtgattggtcca |
255 |
Q |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
6506788 |
ccttaaatatgctgtaggaagtgatgtgattggtcca |
6506752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 6517168 - 6517058
Alignment:
| Q |
145 |
gaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgtaggaaatgatg |
244 |
Q |
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||||||||||||||||||| || ||||||||||||| ||||||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||| |
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| T |
6517168 |
gaagatgaatttgataaagtgcggaaaaatttgttggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatg |
6517069 |
T |
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| Q |
245 |
tgattggtcca |
255 |
Q |
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| T |
6517068 |
aggttggtcca |
6517058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 6521747 - 6521977
Alignment:
| Q |
19 |
gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgccatgattgcatgga |
118 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||||||||||| |||| ||||| |||||||| ||| |||| |
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| T |
6521747 |
gaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttggtctcaacgaaattggacctgcttattttgtttgga |
6521846 |
T |
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| Q |
119 |
atttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtga |
218 |
Q |
| |
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|| | ||||||||||| || || ||| ||| | |||| | |||| ||| ||| ||| ||||| ||||| ||||||||| ||||| ||||| |
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| T |
6521847 |
atacaaacaacgcaacaaatgaggt------tgagtttaacaaagtggtgaatttttttttggatagtttaagaaatagagctgcatcaggggacagtga |
6521940 |
T |
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| Q |
219 |
ccttaaatatgctgtaggaaatgatgtgattggtcca |
255 |
Q |
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|||||||||||||||||||| ||||| | |||||||| |
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| T |
6521941 |
ccttaaatatgctgtaggaagtgatgaggttggtcca |
6521977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 47778065 - 47778150
Alignment:
| Q |
19 |
gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgc |
104 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||| |||| |||||||||||||| | |||||||||| |||||||| |
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| T |
47778065 |
gaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatatttagcctcaatgaaattggacctgc |
47778150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 6512769 - 6512661
Alignment:
| Q |
145 |
gaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgtaggaaatgatg |
244 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||| ||||||||| ||||| |||| |||| || || |||||||||||||||||||| |||| ||||| |
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| T |
6512769 |
gaagatgaatttgataaagtactgaaaaatttattggataatttaagaaatagagcttcatcaggtgatagtgaccttaaatatgctgttggaagtgatg |
6512670 |
T |
|
| Q |
245 |
tgattggtc |
253 |
Q |
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| |||||| |
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| T |
6512669 |
aggttggtc |
6512661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 6517287 - 6517215
Alignment:
| Q |
20 |
aagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatga |
92 |
Q |
| |
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|||||||||| |||||||| ||||| | |||||||||||||| |||| |||||||||||||||| || |||| |
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| T |
6517287 |
aagcaattggttggtacgatgatgatagatgcatgttgcgttactcaagccgttcaatatttggtctctatga |
6517215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 6523749 - 6523810
Alignment:
| Q |
19 |
gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatt |
80 |
Q |
| |
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||||||||||| ||||| || |||||||||||||||||||||| ||| ||||||| ||||| |
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|
| T |
6523749 |
gaagcaattggttggtatgaagatgaaaaatgcatgttgcgttattcagaccgttccatatt |
6523810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 47781973 - 47782034
Alignment:
| Q |
19 |
gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatt |
80 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||||||| |||| ||| ||||||| ||||| |
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| T |
47781973 |
gaagcaattggatggtacgaggatgagaaatgcatgttacgttattcagaccgttctatatt |
47782034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 47788187 - 47788272
Alignment:
| Q |
19 |
gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgc |
104 |
Q |
| |
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|||||||||||||||||||| ||||| ||||| ||||| |||| ||| ||||||||||| | ||| | || ||||| |||||||| |
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| T |
47788187 |
gaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgc |
47788272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 722268 - 722305
Alignment:
| Q |
19 |
gaagcaattggatggtacgacgatgaaaaatgcatgtt |
56 |
Q |
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||||||||||||| |||||| ||||||||||||||||| |
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| T |
722268 |
gaagcaattggattgtacgatgatgaaaaatgcatgtt |
722305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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