View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13511_high_4 (Length: 488)

Name: NF13511_high_4
Description: NF13511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13511_high_4
NF13511_high_4
[»] chr6 (1 HSPs)
chr6 (20-488)||(29399168-29399636)


Alignment Details
Target: chr6 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 20 - 488
Target Start/End: Original strand, 29399168 - 29399636
Alignment:
Q  20 aattctaacaaaactatcatcttcaccatcatcgtcatcacctctctcagctttgatctatgatgttagtttgatttcacctttggtttccatcatggag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29399168 aattctaacaaaactatcatcttcaccatcatcgtcatcacctctctcagctttgatctatgatgttagtttgatttcacctttggtttccatcatggag 29399267  T
Q  120 agtttcacttttcctagctacatatatttcatagcaccagcaagaatgttttctttctttgcatatttatctgttctttctgagaaaagcaatgatggta 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29399268 agtttcacttttcctagctacatatatttcatagcaccagcaagaatgttttctttctttgcatatttatctgttctttctgagaaaagcaatgatggta 29399367  T
Q  220 aacatttttcatgcattggtgatgctgttgaaatccctggaattgcaccaataccaaaatcttcattacctcctttgattcttcaacctaatagtctctt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29399368 aacatttttcatgcattggtgatgctgttgaaatccctggaattgcaccaataccaaaatcttcattacctcctttgattcttcaacctaatagtctctt 29399467  T
Q  320 tgaaaagatacttatggaagatagtcctaaacttagaaagcttcatggtatttttataaactcgtttgaagatctggaagctgaagcactagctgcactt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29399468 tgaaaagatacttatggaagatagtcctaaacttagaaagcttcatggtatttttatgaactcgtttgaagatctggaagctgaagcactagctgcactt 29399567  T
Q  420 aatgatgggaaagttgttcctgggttgcctcctgttcatgctattggtcctttggtgccatgtgaattt 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29399568 aatgatgggaaagttgttcctgggttgcctcctgttcatgctattggtcctttggtgccatgtgaattt 29399636  T

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