View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13511_low_1 (Length: 762)
Name: NF13511_low_1
Description: NF13511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13511_low_1 |
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| [»] scaffold1432 (1 HSPs) |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: scaffold1432 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: scaffold1432
Description:
Target: scaffold1432; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 4 - 420
Target Start/End: Original strand, 1405 - 1820
Alignment:
| Q |
4 |
gatgtcgaagaatatggaagagcagagattgagaaaggatagggttcggttatttttattgttagaaattttacttgtaaggccaattgaggatgctgaa |
103 |
Q |
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|||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
1405 |
gatgtcaaagagaatggaagagcagagattgagagaggatagggttcggttatttttattgtttgaaattttacttgtaaggccaa--gaggatgctgaa |
1502 |
T |
|
| Q |
104 |
tttagctaaagccgctataatccaattactcaaaatactgtactactaaaccaagtcactttcaaataccaaacacacccgatacaaactactaaaataa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1503 |
tttagctaaagccgctataatccaattactcaaaatactgtactactaaaccaagtcactttcaaataccaaacacacccgatacaaactactaaaataa |
1602 |
T |
|
| Q |
204 |
agcaaagcaaaataacaaggaaatcataaattcaccaacaatgcagagatattttataaagagttaaaagacatttaatttgatagggagagtattaaat |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1603 |
agcaaagcaaaataacaaggaaatcataaattcaccaaaaatgcagagatattttataaagagttaaaagacatttaatttgatagggagagtattaaat |
1702 |
T |
|
| Q |
304 |
ttgactgagagagtacgtaaccaagtgaacaccatatatatgcactttt-gttaagatgtgataccatatgaacacgcaaagtgattgtccaaactccaa |
402 |
Q |
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||||||||||||||||||||| | || || |||||||||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
1703 |
ttgactgagagagtacgtaacagaatgcacgccatatatatgcacttttagctaagatgtgataccatttgaacacacaaagtgattgtccaaactccaa |
1802 |
T |
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| Q |
403 |
actattgcaattcacaag |
420 |
Q |
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||||||||| |||||||| |
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| T |
1803 |
actattgcatttcacaag |
1820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 272; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 270 - 647
Target Start/End: Original strand, 25269746 - 25270127
Alignment:
| Q |
270 |
aaagacatttaatttgatagggagagtattaaatttgactgagagagtacgtaaccaagtgaacaccatatatatgcactttt-gttaagatgtgatacc |
368 |
Q |
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|||||||||||||||||||| |||| |||||||| ||||||| |||||||||||| || || || |||||||||||||||||| | |||||||||||||| |
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| T |
25269746 |
aaagacatttaatttgatagagagaatattaaatatgactgaaagagtacgtaacaaaatgcacgccatatatatgcacttttagctaagatgtgatacc |
25269845 |
T |
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| Q |
369 |
atatgaacacgcaaagtgattgtccaaactccaaactattgcaattcacaagcactcatataacttcagtctaattaatcttcatcttccatttctacta |
468 |
Q |
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|| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25269846 |
atttgaacacacaaagtgattgtccaaactccaaactattgcatttcacaagcactcatataacttcagtctaataaatcttcatcttccatttctacta |
25269945 |
T |
|
| Q |
469 |
tgactaattctatatatgttccattgcaa---gaagaagatcaagatgatgaatataccaaccaaaaagtggacaaggaagttcaatgttcaggtgatgc |
565 |
Q |
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|||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||| || ||||||||| ||||| |||||||||||| |
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| T |
25269946 |
tgactatgtctatatatgttccattgcaacaagaagaagatccagatgatgaatataccaatcaaaaaatgaacaaggaagctcaatattcaggtgatgc |
25270045 |
T |
|
| Q |
566 |
tgatgaaatggtttctcaaccacaaaggagcaagggtggtcttatcactatgcctttcatcattggtatgttatctatctat |
647 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25270046 |
tgatgaaatggtttctcaaccacaaaggagcaagggtggtcttatcactatgcctttcatcattggtacgttatctatctat |
25270127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 661 - 744
Target Start/End: Original strand, 25270298 - 25270381
Alignment:
| Q |
661 |
tccaaccagacagacaaaatattctatgttttatttcatgtttattttaaagttataataacatttttattaattgtttgatat |
744 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25270298 |
tccaaccagacagacaaaatattctatgttttatttcatgtttattttaaagttataataacatttttattaattgtttgatat |
25270381 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 168; Significance: 1e-89; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 21968 - 21733
Alignment:
| Q |
4 |
gatgtcgaagaatatggaagagcagagattgagaaaggatagggttcggttatttttattgttagaaattttacttgtaaggccaattgaggatgctgaa |
103 |
Q |
| |
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||||||| |||| |||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| |||| |
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| T |
21968 |
gatgtcgtagaaaatggaagatcagagattgagaaagactagggttcagttatttttattgtttgaaattttacttgtaaggccaa--gaggatggtgaa |
21871 |
T |
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| Q |
104 |
tttagctaaagccgctataatccaattactcaaaatactgtactactaaaccaagtcactttcaaataccaaacacacccgatacaaactactaaaataa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21870 |
tttagctaaagccgctataatccaattactcaaaatact-----agtaaaccaaatcactttcaaataccaaacacacccgatacaaactactaaaataa |
21776 |
T |
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| Q |
204 |
agcaaagcaaaataacaaggaaatcataaattcaccaacaatg |
246 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21775 |
agcaaagcaaaataacaaggaaatcataaaatcaccaacaatg |
21733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 8e-20; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 566 - 647
Target Start/End: Original strand, 43725883 - 43725967
Alignment:
| Q |
566 |
tgatgaaatggtttctcaaccac---aaaggagcaagggtggtcttatcactatgcctttcatcattggtatgttatctatctat |
647 |
Q |
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|||||||||||||||||||| || |||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
43725883 |
tgatgaaatggtttctcaacaacctcaaagacgcaagggtggtcttatcaccatgcctttcatcattggtctgttatctatctat |
43725967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 583 - 642
Target Start/End: Original strand, 43712419 - 43712478
Alignment:
| Q |
583 |
aaccacaaaggagcaagggtggtcttatcactatgcctttcatcattggtatgttatcta |
642 |
Q |
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|||||||||| ||||||||||||||| |||| |||||||| ||||||||||| ||||||| |
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| T |
43712419 |
aaccacaaagaagcaagggtggtcttgtcaccatgccttttatcattggtatcttatcta |
43712478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 570 - 643
Target Start/End: Original strand, 43697500 - 43697576
Alignment:
| Q |
570 |
gaaatggtttctcaac---cacaaaggagcaagggtggtcttatcactatgcctttcatcattggtatgttatctat |
643 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||||||||| |||||||| || |||||||| |||||||| |
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| T |
43697500 |
gaaatggtttctcaacaaccacaaagacgcaagggtggtcttatcaccatgccttttataattggtatcttatctat |
43697576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 583 - 642
Target Start/End: Original strand, 43684963 - 43685022
Alignment:
| Q |
583 |
aaccacaaaggagcaagggtggtcttatcactatgcctttcatcattggtatgttatcta |
642 |
Q |
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||||| |||| ||||||||||||||| |||| |||||||| ||||||||||| ||||||| |
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| T |
43684963 |
aaccagaaagaagcaagggtggtcttgtcaccatgccttttatcattggtatcttatcta |
43685022 |
T |
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