View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13511_low_12 (Length: 283)
Name: NF13511_low_12
Description: NF13511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13511_low_12 |
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| [»] scaffold0217 (1 HSPs) |
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Alignment Details
Target: scaffold0217 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0217
Description:
Target: scaffold0217; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 24441 - 24189
Alignment:
| Q |
17 |
agattttgggaagacttctgattctatagacgggagctaccttaacgttgttatgatcaaaataaatttccatgttttatagtgtaaatggatcatggag |
116 |
Q |
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| T |
24441 |
agattttgggaagacttttgattctatagacgggagctaccttaacgttgttatgatcaaaataaatttccatgttttatagcataaatggatcatggag |
24342 |
T |
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| Q |
117 |
ggtgtaactacaatatctatatatgtgttagtgaatgaatgtccaacaaacgagttccaattcgaacaaggtattcgctaaagtgaccccctttcactgc |
216 |
Q |
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| T |
24341 |
ggtgtaactacaacatctatatttgtgttagtgaatgaatgtccaacaaacgagttccaattcgaacaaggtattcgctaaagtgaccccctttcaccgc |
24242 |
T |
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| Q |
217 |
ttctctttttaatagcggcggagggccttattgtcatgatgcatgctctagtc |
269 |
Q |
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| T |
24241 |
ttctctttttaatagcagcggaaggccttattctcatgatgcatgctgtagtc |
24189 |
T |
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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 263
Target Start/End: Complemental strand, 21638087 - 21637892
Alignment:
| Q |
67 |
ttatgatcaaaataaatttccatgttttatagtgtaaatggatcatggagggtgtaactacaatatctatatatgtgttagtgaatgaatgtccaacaaa |
166 |
Q |
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| T |
21638087 |
ttatgaccaaactgaatttccctgttttatggtgcaaatggatcatggagtgtgtaactacaatgtctgcatttgtgctagtgagcgactg-ccaacaaa |
21637989 |
T |
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| Q |
167 |
cgagttccaattcgaacaaggtattcgctaaagtgaccccctttcactgcttctctttttaatagcggcggagggccttattgtcatgatgcatgct |
263 |
Q |
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| T |
21637988 |
cgagttacagctagaacgaggtatgcgctaaggtgacctactttctctgtttctcttattaattgtggtggaaggccttaattttatgatgaatgct |
21637892 |
T |
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