View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13511_low_3 (Length: 492)
Name: NF13511_low_3
Description: NF13511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13511_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 75 - 474
Target Start/End: Original strand, 17800461 - 17800857
Alignment:
| Q |
75 |
atactccgccgccgtcacctcctcggctgtcggtgaagacacgatctgagcgaaagaagagtaatgtgaagagagagatagcaatggtttgggcttccgt |
174 |
Q |
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| T |
17800461 |
atactccgccgccgtcacctcctcggctgtcggtgaagacacgatctgagcgaaagaagagtaatgtgaagagagagatagcaatggtttgggcttccgt |
17800560 |
T |
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| Q |
175 |
gctctctaatcaacgaaagcgaaagaagaaacagaaaccgaaaaacgatcataatcaccattgcgataatgtggaggagttaacaaacaatacaacagcg |
274 |
Q |
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| T |
17800561 |
gctctctaatcaacgaaagcgaaagaagaaacagaaaccgaaaaacgatcataatcaccattgcgataatgtggaggagttaacaaacaatacaacagcg |
17800660 |
T |
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| Q |
275 |
ccaccaccgataccgacgacgccaccgcctcctccaccaccacctccatcagtttttcacagtatattcagaaaaagtcacggcaagagtaagaaaatcc |
374 |
Q |
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| T |
17800661 |
---ccaccgataccgacgacgccaccgcctcctccaccaccacctccatcagtttttcacagtatattcagaaaaagtcacggcaagagtaagaaaatcc |
17800757 |
T |
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| Q |
375 |
attcagtgccagcgccgccgccacctccgccatctaggagatcgtctaaaccaaagaaacatatccctccgccaccaccaactcctccacctgcaccatc |
474 |
Q |
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| T |
17800758 |
attcagtgccagcgccgccgccacctccgccatctaggagatcgtctaaaccaaagaaacatatccctccgccaccaccaactcctccacctgcaccatc |
17800857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 17800376 - 17800443
Alignment:
| Q |
14 |
aggagagtggagagtagcaacgagataacggaggttgaagatactgaattcacaaggatccatactcc |
81 |
Q |
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| T |
17800376 |
aggagagtcgagagtagcaacgagataacggaggttgaagatactgaattcacaaggattcatactcc |
17800443 |
T |
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