View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13511_low_6 (Length: 461)
Name: NF13511_low_6
Description: NF13511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13511_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 20 - 426
Target Start/End: Original strand, 33014628 - 33015034
Alignment:
| Q |
20 |
ctctcaaccctccacaccccaccacgtatcctcgaactcggctccggcaccggcatcgtcggcatagtcgctgccgccacactcggaacaaacgtaaccc |
119 |
Q |
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| T |
33014628 |
ctctcaaccctccacaccccaccacgtatcctcgaactcggctccggcaccggcatcgtcggcatagtcgctgccgccacactcggaacaaacgtaaccc |
33014727 |
T |
|
| Q |
120 |
taaccgacctccctcacgtcgttcccaatctcaaattcaacgcggaagctaatgcagaagctgtggggtccaacggtgggagtgttacgtttgcatccct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33014728 |
taaccgacctccctcacgtcgttcccaatctcaaattcaacgcggaagctaatgcagaagctgtggggtccaacggtgggagtgttacgtttgcatccct |
33014827 |
T |
|
| Q |
220 |
taggtggggtcatgctgctgacgtggaaatgattggaggagagtttgatgttgtgatagcttcggatgtggtgtatcatgatcatctttatgaaccgttg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33014828 |
taggtggggtcatgctgctgacgtggaaatgattggaggagagtttgatgttgtgatagcttcagatgtggtgtatcatgatcatctttatgaaccgttg |
33014927 |
T |
|
| Q |
320 |
attgaaacgctgaggttgatgttgattaagaaggagattgtgtttgtgatggctcatatgaagaggtggaaaaaggagagtttgttttttaagaaagcta |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33014928 |
attgaaacgctgaggttgatgttgattaagaaggagattgtgtttgtgatggcgcatatgaagaggtggaaaaaggagagtttgttttttaagaaagcta |
33015027 |
T |
|
| Q |
420 |
ggaagta |
426 |
Q |
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| T |
33015028 |
ggaagta |
33015034 |
T |
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