View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13511_low_7 (Length: 438)
Name: NF13511_low_7
Description: NF13511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13511_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 10 - 420
Target Start/End: Original strand, 1522179 - 1522588
Alignment:
| Q |
10 |
gagtgagatgaagagtgtacgagggagttttatttcagcttggtgagtgagaaaaatgataaaagaatgagagatgagtgtgtttttaggcttatatact |
109 |
Q |
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| T |
1522179 |
gagtgagaagaagagtgtacgagggagttttatttcagcttggtgagtgagaaaaatgataaaagaatgagagatgagtgtgtttttaggcttatatact |
1522278 |
T |
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| Q |
110 |
tatgcagaaactaccaccttacctctctgtaaacaacattatcaggcacgattacaatcaatattgtagtgtgataaacattatacgggatgttacactt |
209 |
Q |
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| T |
1522279 |
tatgcagaaactaccaccttacctctctgtaaacaacattatcaggcacgattacaatcaatattgtagtgtgataaacattatacgggatgttacactt |
1522378 |
T |
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| Q |
210 |
tattcccttaagaataagcgtggatagtttatttgcacttccgaccttagtttccaaacatacattcgccactaactgattcttttgtccatacctattc |
309 |
Q |
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| T |
1522379 |
tattcccttaagaataagcgtggatagtttatttgcacttccgaccttagtttccaaacatacattcgccactaactgattcttttgtccatacctattc |
1522478 |
T |
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| Q |
310 |
aaggggttcacatcttgatcatccatacaaatttgtgatacaaatttgttatcctttttaatgaaactagcaatagatagtgttatagaaaaatttgttc |
409 |
Q |
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| T |
1522479 |
aaggggtt-acatcttgatcatccatacaaatttgtgatacaaatttgttatcctttttaataaaactagcaatagatagtgttatagaaaaatctgttc |
1522577 |
T |
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| Q |
410 |
aagggtatata |
420 |
Q |
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| T |
1522578 |
aagggtatata |
1522588 |
T |
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