View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13511_low_9 (Length: 377)
Name: NF13511_low_9
Description: NF13511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13511_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 37405848 - 37406195
Alignment:
| Q |
19 |
catgtttgcaatgcttgcagaaacatttgcagttctcatcaccaaagtggagaaacaaaagcaccctgcagaggttgttgttgctttctatgtaatattt |
118 |
Q |
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| T |
37405848 |
catgtttgcaatgcttgcagaaacatttgcagttctcatcaccaaagtggagaaacaaaagcaccctgcagaggttgttgttgctttctatgtaatattt |
37405947 |
T |
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| Q |
119 |
gtaattcatctttggaacatgggaaatcaagggaaaactgcctggttggttccgtgnnnnnnntcggaagcaaattgttcaaacttgacaattcaaataa |
218 |
Q |
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| T |
37405948 |
gtaattcagctttggaacatgggaaatcaagggaaaactgcctggttggttcggtgaaaaaaatcggaagcaaattgttcaaacttgacaattcaaataa |
37406047 |
T |
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| Q |
219 |
aaatggaaattttcttggttggtcatcatcaccatctccttcaattgcattcccctcatcttttccaagaagatataacaagcgtgccgttctctgtgga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37406048 |
aaatggaaattttcttggttggtcatcatcaccatctccttcaattgcatttccctcatcttttccaagaagatataacaagcgtgccgttctctgtgga |
37406147 |
T |
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| Q |
319 |
gtttcttattcaacaagaaaattcaggcttaagggaaccattgatgat |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37406148 |
gtttcttattcaacaagaaaattcaggcttaagggaaccattaatgat |
37406195 |
T |
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