View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13512_high_4 (Length: 252)
Name: NF13512_high_4
Description: NF13512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13512_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 3415715 - 3415948
Alignment:
| Q |
1 |
ctaatagattccattttagcttgtcnnnnnnntaatagaccaatgaccaatacttgagttcattttgtattgatacttaaaataaaaatgcttgtgcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3415715 |
ctaatagattccattttagcttgtcaaaaaaataatagaccaatgaccaatatttgagttcattttgtattcatacttaaaataaaaatgcttgtgcaaa |
3415814 |
T |
|
| Q |
101 |
gtgagtaaatttttcaaccaaaaaacnnnnnnnnnnnnnnnnnnnccctacatgtacattaataatgcaagtaggtatatgcaattaaatatggtgttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3415815 |
gtgagtaaatttttcaaccaaaaaacttttttcttttctctttttccctacatgtacattaataatgcaagtaggtatatgcaattaaatatggtgttca |
3415914 |
T |
|
| Q |
201 |
tatggtcccatggaacgtgatcaatgtagggatt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3415915 |
tatggtcccatggaacgtgatcaatgtagggatt |
3415948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University