View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13512_low_1 (Length: 583)
Name: NF13512_low_1
Description: NF13512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13512_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 83 - 356
Target Start/End: Original strand, 6450541 - 6450814
Alignment:
| Q |
83 |
tggcgattgaaaaacacatgcgaatgtgatgaaaatcgatatacgacagaagatgaattgaggtgagagacacacaagacatggaatatttgaacacgga |
182 |
Q |
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| T |
6450541 |
tggcgattgaaaaacacgcgcgaatgtgatgaaaatcgatatacgacagaagatgaattgaggtgagagacacacaagacatggaatatttgaacacgga |
6450640 |
T |
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| Q |
183 |
gagggaatattggattgcaacattacataattagacaaatgctagggtttcaatttttaaatgttaacgttggaagcagacgattgtttggaatcatttc |
282 |
Q |
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| T |
6450641 |
gagggaatattggattgcaacattacataattagacaaatgctagggtttcaatttttaaatgttaacgttggaagcagacgattgtttggaatcatttc |
6450740 |
T |
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| Q |
283 |
taaaattcctacttgcacttccttccatgctttgtcttcactcttaagtattgcatgtacaactcttaatagaa |
356 |
Q |
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| T |
6450741 |
taaaattcctacttgcacttccttccatgctttgtcttgactcttaagtattgcatgtacaactcttaatagaa |
6450814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 487 - 565
Target Start/End: Original strand, 6450966 - 6451044
Alignment:
| Q |
487 |
ttttagatatagggacacttctgtctataccaacaagacatatcttttttcggtagtacaaaacatgagagcttcatat |
565 |
Q |
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| T |
6450966 |
ttttagatatagggacacttctgtctataccaacaagacatatcttttttctgtagtacaaaacatcagagcttcatat |
6451044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6450503 - 6450542
Alignment:
| Q |
1 |
tatagcctagacaaggtcacgccgacgagtcacgtgagtg |
40 |
Q |
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| T |
6450503 |
tatagcctagacaaggtcacgccgacgagtcacgtgagtg |
6450542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 461
Target Start/End: Original strand, 6450841 - 6450907
Alignment:
| Q |
389 |
caattgtaattccgtattattcatagtgaatgaattgaggtaatttatagtattattattatgagtcatgtat |
461 |
Q |
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| T |
6450841 |
caattgtaattccgtattattgatagttaatgaattgaggt---ttatagtatt---attatgagtcatgtat |
6450907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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